myRT

myRT report for GCA_000364225.1_Euba_plex_ASF492_V1

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Seq: KB822499.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.4, whole genome shotgun sequence (578852 bp)
Overview 1 RT 1: 42083-50649 bp Neighborhood of RT #1 [42083, 50681] Phage_int_SAM_3 INT_ICEBs1_C_like DEXHc_UvrB AE_Prim_S_like RVT-UG10 DUF1016_N YhcG_C Feature: gene Location: 42083-43408 bp Ori: EMZ26087.1 Feature: domain Description: Phage_int_SAM_3 Location: 42353-42512 bp Feature: domain Description: Phage_int_SAM_3 Location: 42353-4251 2 bp Feature: domain Description: INT_ICEBs1_C_like Location: 42704-43268 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 42704-43268 bp Feature: gene Location: 43762-44109 bp Ori: EMZ26088.1 Feature: domain Description: DEXHc_UvrB Location: 43849-44107 bp Feature: domain Description: DEXHc_UvrB Location: 43849-441 07 bp Feature: gene Location: 44434-46956 bp Ori: EMZ26089.1 Feature: domain Description: AE_Prim_S_like Location: 44623-44824 bp Feature: domain Description: AE_Prim_S_like Location: 44623-44824 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 45790-46399 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 45790-46399 bp Feature: gene Location: 46946-49630 bp Feature: gene Location: 49695-50681 bp Ori: EMZ26091.1 Feature: domain Description: DUF1016_N Location: 49776-50184 bp Feature: domain Description: DUF1 01 6_N Location: 49776-501 84 bp Feature: domain Description: YhcG_C Location: 50232-50649 bp Feature: domain Description: YhcG_C Location: 50232-50649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), DEXHc_UvrB (cd17916), AE_Prim_S_like (cl01287), RVT-UG10, DUF1016_N (pfam17761), YhcG_C

Seq: KB822475.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.13, whole genome shotgun sequence (123694 bp)
Overview 1 RT 1: 1-5836 bp 2 RT 2: 121820-123693 bp Neighborhood of RT #1 [1, 5919] SinI RVT-GII Intron_maturas2 SR_TndX_transposase Recombinase SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #2 [121820, 123693] RVT-GII Feature: gene Location: 1-146 bp Ori: EMZ19568.1 Feature: domain Description: SinI Location: 25-79 bp Feature: domain Description: SinI Location: 2 5-79 bp Feature: gene Location: 451-2553 bp Ori: EMZ19569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595-790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 595-790 bp Feature: domain Description: Intron_maturas2 Location: 874-1174 bp Feature: domain Description: Intron_maturas2 Location: 874-1174 bp Feature: gene Location: 2577-4217 bp Ori: EMZ19570.1 Feature: domain Description: SR_TndX_transposase Location: 2601-3048 bp Feature: domain Description: SR_TndX_transposase Location: 2 601-3048 bp Feature: domain Description: Recombinase Location: 3150-3507 bp Feature: domain Description: Recombinase Location: 3150-3507 bp Feature: gene Location: 4207-5919 bp Ori: EMZ19571.1 Feature: domain Description: SR_TndX_transposase Location: 4327-4741 bp Feature: domain Description: SR_TndX_transposase Location: 432 7-4741 bp Feature: domain Description: Recombinase Location: 4843-5206 bp Feature: domain Description: Recombinase Location: 4843-52 06 bp Feature: domain Description: Zn_ribbon_recom Location: 5269-5425 bp Feature: domain Description: Zn_ribbon_recom Location: 52 69-542 5 bp Feature: domain Description: DUF4368 Location: 5737-5836 bp Feature: domain Description: DUF4368 Location: 5737-5836 bp Feature: gene Location: 121820-121942 bp Feature: gene Location: 121939-122325 bp Feature: gene Location: 122641-123369 bp Ori: EMZ19435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122761-123211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 761-12 32 11 bp Feature: gene Location: 123538-123693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SinI (pfam08671), RVT-GII, Intron_maturas2 (pfam01348), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: KB822481.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.19, whole genome shotgun sequence (50301 bp)
Overview 1 RT 1: 29628-36316 bp 2 RT 2: 46021-49717 bp Neighborhood of RT #1 [29628, 36324] DDE_Tnp_1_4 RVT-GII HNHc SR_TndX_transposase Recombinase PinE DUF4368 TnpV Neighborhood of RT #2 [46021, 50301] T_den_put_tspse T_den_put_tspse RVT-GII Feature: gene Location: 29628-30194 bp Feature: gene Location: 30364-31734 bp Ori: EMZ17433.1 Feature: domain Description: DDE_Tnp_1_4 Location: 30370-31717 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 03 70-3 1717 bp Feature: gene Location: 31847-33703 bp Ori: EMZ17434.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32135-32882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 213 5-3 2882 bp Feature: domain Description: HNHc Note: nucleases Location: 33449-33587 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 449-3 3 587 bp Feature: gene Location: 34203-36083 bp Ori: EMZ17435.1 Feature: domain Description: SR_TndX_transposase Location: 34227-34635 bp Feature: domain Description: SR_TndX_transposase Location: 3 4227-3 463 5 bp Feature: domain Description: Recombinase Location: 34734-35097 bp Feature: domain Description: Recombinase Location: 3 473 4-3 5097 bp Feature: domain Description: PinE Location: 35292-35475 bp Feature: domain Description: PinE Location: 3 5292-3 5475 bp Feature: domain Description: DUF4368 Location: 35601-35793 bp Feature: domain Description: DUF43 68 Location: 3 5601-3 5793 bp Feature: gene Location: 36178-36324 bp Ori: EMZ17436.1 Feature: domain Description: TnpV Location: 36181-36316 bp Feature: domain Description: TnpV Location: 3 6181-3 63 16 bp Feature: gene Location: 46021-46875 bp Ori: EMZ17451.1 Feature: domain Description: T_den_put_tspse Location: 46180-46477 bp Feature: domain Description: T_den_put_tspse Location: 46180-46477 bp Feature: domain Description: T_den_put_tspse Location: 46657-46855 bp Feature: domain Description: T_den_put_tspse Location: 46657-46855 bp Feature: gene Location: 46973-47614 bp Feature: gene Location: 48670-50301 bp Ori: EMZ17453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48985-49717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48985-49717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, HNHc (smart00507), SR_TndX_transposase (cd03770), Recombinase (pfam07508), PinE (COG1961), DUF4368 (pfam14287), TnpV (pfam14198), T_den_put_tspse (TIGR01784)

Seq: KB822482.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.2, whole genome shotgun sequence (896384 bp)
Overview 1 RT 1: 55232-58446 bp 2 RT 2: 499765-504085 bp Neighborhood of RT #1 [55232, 58454] RVT-DGRs Phage_XkdX Neighborhood of RT #2 [499765, 504354] ParE_toxin RVT-GII Intron_maturas2 HNHc SR_TndX_transposase AcrR Feature: gene Location: 55232-55858 bp Feature: gene Location: 55906-56511 bp Feature: gene Location: 56844-58010 bp Ori: EMZ34721.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57033-57750 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57033-57750 bp Feature: gene Location: 57992-58291 bp Feature: gene Location: 58296-58454 bp Ori: EMZ34723.1 Feature: domain Description: Phage_XkdX Location: 58329-58446 bp Feature: domain Description: Phage_XkdX Location: 58329-584 4 6 bp Feature: gene Location: 499765-500097 bp Ori: EMZ32055.1 Feature: domain Description: ParE_toxin Location: 499783-500065 bp Feature: domain Description: ParE_toxin Location: 4 99783-500065 bp Feature: gene Location: 500084-500326 bp Feature: gene Location: 501123-502940 bp Ori: EMZ32057.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501387-502206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501387-502206 bp Feature: domain Description: Intron_maturas2 Location: 502275-502608 bp Feature: domain Description: Intron_maturas2 Location: 502275-502608 bp Feature: domain Description: HNHc Note: nucleases Location: 502764-502905 bp Feature: domain Description: HNHc Note: nucleases Location: 502764 -502905 bp Feature: gene Location: 503147-503314 bp Ori: EMZ32058.1 Feature: domain Description: SR_TndX_transposase Location: 503180-503309 bp Feature: domain Description: SR_TndX_transposase Location: 503180-503309 bp Feature: gene Location: 503719-504354 bp Ori: EMZ32059.1 Feature: domain Description: AcrR Location: 503749-504085 bp Feature: domain Description: AcrR Location: 50374 9-504 085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693), ParE_toxin (pfam05016), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SR_TndX_transposase (cd03770), AcrR (COG1309)

Seq: KB822503.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.8, whole genome shotgun sequence (250067 bp)
Overview 1 RT 1: 209122-217791 bp Neighborhood of RT #1 [209122, 217791] NERD RecB RecB RVT-GII GIIM Feature: gene Location: 209122-211770 bp Feature: gene Location: 211778-214897 bp Ori: EMZ21637.1 Feature: domain Description: NERD Location: 211808-212060 bp Feature: domain Description: NERD Location: 211808-212060 bp Feature: domain Description: RecB Location: 212774-213062 bp Feature: domain Description: RecB Location: 212774-213062 bp Feature: domain Description: RecB Location: 213344-214856 bp Feature: domain Description: RecB Location: 213344-21485 6 bp Feature: gene Location: 215402-216511 bp Ori: EMZ21638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215468-216158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215 468-21615 8 bp Feature: domain Description: GIIM Note: maturase Location: 216230-216419 bp Feature: domain Description: GIIM Note: maturase Location: 216230-216419 bp Feature: gene Location: 216618-217421 bp Feature: gene Location: 217621-217791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), RecB (COG4998), RVT-GII, GIIM (pfam08388)

Seq: KB822484.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.21, whole genome shotgun sequence (34428 bp)
Overview 1 RT 1: 19962-21945 bp Neighborhood of RT #1 [19962, 21950] RVT-GII HNHc TraG-D_C Feature: gene Location: 19962-20654 bp Ori: EMZ17167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20097-20574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20097-20574 bp Feature: gene Location: 20702-21508 bp Ori: EMZ17168.1 Feature: domain Description: HNHc Note: nucleases Location: 21254-21398 bp Feature: domain Description: HNHc Note: nucleases Location: 21254-21398 bp Feature: gene Location: 21639-21950 bp Ori: EMZ17169.1 Feature: domain Description: TraG-D_C Location: 21816-21945 bp Feature: domain Description: TraG-D_C Location: 21816 -21945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)

Seq: KB822504.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.9, whole genome shotgun sequence (225537 bp)
Overview 1 RT 1: 180379-182717 bp Neighborhood of RT #1 [180379, 182731] RVT-DGRs Avd_like Feature: gene Location: 180379-180768 bp Feature: gene Location: 180983-181087 bp Feature: gene Location: 181102-182139 bp Ori: EMZ21148.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181312-181912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181312-181912 bp Feature: gene Location: 182126-182344 bp Feature: gene Location: 182363-182731 bp Ori: EMZ21150.1 Feature: domain Description: Avd_like Location: 182387-182717 bp Feature: domain Description: Avd_like Location: 182387 -1827 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: KB822471.1 Eubacterium plexicaudatum ASF492 genomic scaffold acLZb-supercont1.1, whole genome shotgun sequence (1044858 bp)
Overview 1 RT 1: 701143-706891 bp Neighborhood of RT #1 [701143, 707127] HAD_5NT DUF362 RVT-GII GIIM PBECR4 Feature: gene Location: 701143-701805 bp Ori: EMZ36323.1 Feature: domain Description: HAD_5NT Location: 701158-701779 bp Feature: domain Description: HAD_5NT Location: 701158 -701779 bp Feature: gene Location: 701862-702959 bp Ori: EMZ36324.1 Feature: domain Description: DUF362 Location: 701976-702549 bp Feature: domain Description: DUF362 Location: 701976-702549 bp Feature: gene Location: 704149-705453 bp Ori: EMZ36325.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704449-705070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704449-705070 bp Feature: domain Description: GIIM Note: maturase Location: 705142-705364 bp Feature: domain Description: GIIM Note: maturase Location: 705142-705364 bp Feature: gene Location: 706038-706292 bp Feature: gene Location: 706282-707127 bp Ori: EMZ36327.1 Feature: domain Description: PBECR4 Location: 706294-706891 bp Feature: domain Description: PBECR4 Location: 706294-7068 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_5NT (cd07504), DUF362 (pfam04015), RVT-GII, GIIM (pfam08388), PBECR4 (pfam18813)