myRT

myRT report for GCA_000364245.1_Clos_bact_ASF502_V1

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Seq: KB822452.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.2, whole genome shotgun sequence (673527 bp)
Overview 1 RT 1: 439070-447303 bp Neighborhood of RT #1 [439070, 447554] MalT MalT LRR_4 LRR_4 LRR_4 LRR_4 LRR_4 LRR_4 RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 439070-441448 bp Ori: EMZ29595.1 Feature: domain Description: MalT Location: 439310-440048 bp Feature: domain Description: MalT Location: 43931 0-440048 bp Feature: domain Description: MalT Location: 440645-441446 bp Feature: domain Description: MalT Location: 440645-441 446 bp Feature: gene Location: 441468-443846 bp Ori: EMZ29596.1 Feature: domain Description: LRR_4 Location: 441708-441831 bp Feature: domain Description: LRR_4 Location: 441 708-441 831 bp Feature: domain Description: LRR_4 Location: 441837-441954 bp Feature: domain Description: LRR_4 Location: 441 837-441 954 bp Feature: domain Description: LRR_4 Location: 441969-442080 bp Feature: domain Description: LRR_4 Location: 441 969-442080 bp Feature: domain Description: LRR_4 Location: 442098-442203 bp Feature: domain Description: LRR_4 Location: 442098-442203 bp Feature: domain Description: LRR_4 Location: 442221-442326 bp Feature: domain Description: LRR_4 Location: 442221 -442326 bp Feature: domain Description: LRR_4 Location: 442476-442614 bp Feature: domain Description: LRR_4 Location: 442476-44261 4 bp Feature: gene Location: 444805-446103 bp Ori: EMZ29597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445060-445750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445060-445750 bp Feature: domain Description: GIIM Note: maturase Location: 445831-446026 bp Feature: domain Description: GIIM Note: maturase Location: 445831 -446026 bp Feature: gene Location: 446282-446461 bp Feature: gene Location: 446517-447554 bp Ori: EMZ29599.1 Feature: domain Description: Zn_Tnp_IS91 Location: 446523-446676 bp Feature: domain Description: Zn_Tnp_IS91 Location: 446523-446676 bp Feature: domain Description: Y2_Tnp Location: 446802-447303 bp Feature: domain Description: Y2_Tnp Location: 446802-447303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalT (COG2909), LRR_4 (pfam12799), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: KB822470.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.9, whole genome shotgun sequence (272319 bp)
Overview 1 RT 1: 206785-212321 bp Neighborhood of RT #1 [206785, 212323] DUF3801 VirD4 VirD4 RVT-GII HNHc TraG-D_C Maff2 Feature: gene Location: 206785-207255 bp Ori: EMZ23660.1 Feature: domain Description: DUF3801 Location: 206869-207139 bp Feature: domain Description: DUF3801 Location: 2 06869-2 07139 bp Feature: gene Location: 207252-208103 bp Ori: EMZ23661.1 Feature: domain Description: VirD4 Location: 207477-207798 bp Feature: domain Description: VirD4 Location: 2 07477-2 07798 bp Feature: domain Description: VirD4 Location: 207891-208056 bp Feature: domain Description: VirD4 Location: 2 07891-2 08056 bp Feature: gene Location: 208809-210716 bp Ori: EMZ23662.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209148-209895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 09148-2 09895 bp Feature: domain Description: HNHc Note: nucleases Location: 210462-210600 bp Feature: domain Description: HNHc Note: nucleases Location: 2 10462 -2 10600 bp Feature: gene Location: 210994-211944 bp Ori: EMZ23663.1 Feature: domain Description: TraG-D_C Location: 211372-211726 bp Feature: domain Description: TraG-D_C Location: 2 11372 -2 1172 6 bp Feature: gene Location: 212069-212323 bp Ori: EMZ23664.1 Feature: domain Description: Maff2 Location: 212189-212321 bp Feature: domain Description: Maff2 Location: 2 12 189-2 12 32 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: KB822442.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.10, whole genome shotgun sequence (265820 bp)
Overview 1 RT 1: 70210-75219 bp Neighborhood of RT #1 [70210, 75242] Zn_Tnp_IS91 Y2_Tnp RVT-GII GIIM EcfT cbiO Feature: gene Location: 70210-71247 bp Ori: EMZ23333.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70216-70369 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70216-703 69 bp Feature: domain Description: Y2_Tnp Location: 70495-70996 bp Feature: domain Description: Y2_Tnp Location: 70495-70996 bp Feature: gene Location: 71303-71482 bp Feature: gene Location: 71661-72959 bp Ori: EMZ23335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71916-72606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71916-72606 bp Feature: domain Description: GIIM Note: maturase Location: 72687-72882 bp Feature: domain Description: GIIM Note: maturase Location: 72687-72882 bp Feature: gene Location: 73536-74360 bp Ori: EMZ23336.1 Feature: domain Description: EcfT Location: 73554-74325 bp Feature: domain Description: EcfT Location: 73 554-743 25 bp Feature: gene Location: 74379-75242 bp Ori: EMZ23337.1 Feature: domain Description: cbiO Location: 74382-75219 bp Feature: domain Description: cbiO Location: 743 82-75219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-GII, GIIM (pfam08388), EcfT (COG0619), cbiO (TIGR01166)

Seq: KB822459.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.26, whole genome shotgun sequence (6731 bp)
Overview 1 RT 1: 2912-6731 bp Neighborhood of RT #1 [2912, 6731] Maff2 TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 2912-3127 bp Ori: EMZ19227.1 Feature: domain Description: Maff2 Location: 2915-3122 bp Feature: domain Description: Maff2 Location: 2915-3122 bp Feature: gene Location: 3349-4053 bp Ori: EMZ19228.1 Feature: domain Description: TraG-D_C Location: 3490-3844 bp Feature: domain Description: TraG-D_C Location: 34 90-384 4 bp Feature: gene Location: 4087-6054 bp Ori: EMZ19229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4507-5338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 507-5338 bp Feature: domain Description: Intron_maturas2 Location: 5413-5716 bp Feature: domain Description: Intron_maturas2 Location: 54 13-5716 bp Feature: gene Location: 6528-6731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: KB822448.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.16, whole genome shotgun sequence (101721 bp)
Overview 1 RT 1: 61993-65322 bp Neighborhood of RT #1 [61993, 65322] TnpB_IS66 RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 61993-62328 bp Ori: EMZ20441.1 Feature: domain Description: TnpB_IS66 Location: 62023-62311 bp Feature: domain Description: TnpB_IS66 Location: 62023-62311 bp Feature: gene Location: 62321-62695 bp Feature: gene Location: 62962-64491 bp Ori: EMZ20443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62965-63775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62965 -63775 bp Feature: domain Description: Intron_maturas2 Location: 63844-64174 bp Feature: domain Description: Intron_maturas2 Location: 63844-64174 bp Feature: gene Location: 64683-65162 bp Ori: EMZ20444.1 Feature: domain Description: TraG-D_C Location: 64686-64935 bp Feature: domain Description: TraG-D_C Location: 64686-64935 bp Feature: gene Location: 65155-65322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: KB822443.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.11, whole genome shotgun sequence (277495 bp)
Overview 1 RT 1: 17237-23275 bp Neighborhood of RT #1 [17237, 23328] TraG_VirD4 RVT-GII DDE_Tnp_1 RVT-GII VirD4 DUF3801 Feature: gene Location: 17237-17426 bp Ori: EMZ23032.1 Feature: domain Description: TraG_VirD4 Location: 17252-17405 bp Feature: domain Description: TraG_VirD4 Location: 17252-17405 bp Feature: gene Location: 17612-18697 bp Ori: EMZ23033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17672-17885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176 72-17885 bp Feature: gene Location: 18694-18840 bp Feature: gene Location: 18997-20514 bp Ori: EMZ23035.1 Feature: domain Description: DDE_Tnp_1 Location: 19732-20470 bp Feature: domain Description: DDE_Tnp_1 Location: 19732-20470 bp Feature: gene Location: 20547-20666 bp Feature: gene Location: 20663-21418 bp Ori: EMZ23037.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20921-21389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20921-21389 bp Feature: gene Location: 22100-22855 bp Ori: EMZ23038.1 Feature: domain Description: VirD4 Location: 22409-22790 bp Feature: domain Description: VirD4 Location: 22409-22790 bp Feature: gene Location: 22852-23328 bp Ori: EMZ23039.1 Feature: domain Description: DUF3801 Location: 22915-23275 bp Feature: domain Description: DUF3801 Location: 22915-23275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, DDE_Tnp_1 (pfam01609), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: KB822469.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.8, whole genome shotgun sequence (336801 bp)
Overview 1 RT 1: 200962-207495 bp Neighborhood of RT #1 [200962, 207548] YhcG RVT-UNC dnaG galliderm_ABC Feature: gene Location: 200962-202008 bp Ori: EMZ23947.1 Feature: domain Description: YhcG Location: 201280-201763 bp Feature: domain Description: YhcG Location: 201280-2017 63 bp Feature: gene Location: 202326-203759 bp Feature: gene Location: 203786-204619 bp Ori: EMZ23949.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 203792-204038 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2037 92-204038 bp Feature: gene Location: 204912-206693 bp Ori: EMZ23950.1 Feature: domain Description: dnaG Location: 204993-206148 bp Feature: domain Description: dnaG Location: 204993-206148 bp Feature: gene Location: 207033-207548 bp Ori: EMZ23951.1 Feature: domain Description: galliderm_ABC Location: 207051-207495 bp Feature: domain Description: galliderm_ABC Location: 207 051-207 495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), RVT-UG3/RVT-DGRs/RVT-UG1/RVT-UG28b(RVT-UNC), dnaG (TIGR01391), galliderm_ABC (TIGR03740)

Seq: KB822441.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.1, whole genome shotgun sequence (907787 bp)
Overview 1 RT 1: 190616-194494 bp 2 RT 2: 618592-623579 bp 3 RT 3: 675638-679050 bp Neighborhood of RT #1 [190616, 194494] RVT-DGRs Neighborhood of RT #2 [618592, 623587] ECF-ribofla_trS RVT-Retrons PRK05912 CoA_E_activ Neighborhood of RT #3 [675638, 679541] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 190616-191638 bp Feature: gene Location: 191718-192272 bp Feature: gene Location: 192791-193777 bp Ori: EMZ34386.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 192809-193457 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1928 09-193457 bp Feature: gene Location: 193740-193964 bp Feature: gene Location: 193970-194494 bp Feature: gene Location: 618592-619206 bp Ori: EMZ32938.1 Feature: domain Description: ECF-ribofla_trS Location: 618610-619144 bp Feature: domain Description: ECF-ribofla_trS Location: 618 610-619144 bp Feature: gene Location: 619378-619608 bp Feature: gene Location: 619662-620675 bp Ori: EMZ32940.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 619827-620382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6198 27-62038 2 bp Feature: gene Location: 621151-622374 bp Ori: EMZ32941.1 Feature: domain Description: PRK05912 Location: 621157-622366 bp Feature: domain Description: PRK05912 Location: 621157-622366 bp Feature: gene Location: 622823-623587 bp Ori: EMZ32942.1 Feature: domain Description: CoA_E_activ Location: 622841-623579 bp Feature: domain Description: CoA_E_activ Location: 6228 41-623579 bp Feature: gene Location: 675638-676036 bp Feature: gene Location: 676033-676449 bp Feature: gene Location: 676394-677545 bp Ori: EMZ32437.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 676604-677264 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 676604-677264 bp Feature: gene Location: 677993-678403 bp Ori: EMZ32438.1 Feature: domain Description: Avd_like Location: 678074-678392 bp Feature: domain Description: Avd_like Location: 678 074-678 392 bp Feature: gene Location: 678483-679541 bp Ori: EMZ32439.1 Feature: domain Description: FGE-sulfatase Location: 678720-679050 bp Feature: domain Description: FGE-sulfatase Location: 678 720-679050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ECF-ribofla_trS (pfam07155), RVT-Retrons, PRK05912 (tyrosyl-tRNA synthetase; Validated), CoA_E_activ (TIGR00241), Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: KB822460.1 Clostridium sp. ASF502 genomic scaffold acMal-supercont1.27, whole genome shotgun sequence (2883 bp)
Overview 1 RT 1: 3-2883 bp Neighborhood of RT #1 [3, 2883] RVT-GII Intron_maturas2 Feature: gene Location: 3-203 bp Feature: gene Location: 677-2644 bp Ori: EMZ19214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109 7-19 28 bp Feature: domain Description: Intron_maturas2 Location: 2003-2306 bp Feature: domain Description: Intron_maturas2 Location: 2003-2306 bp Feature: gene Location: 2678-2883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)