myRT

myRT report for GCA_000364265.1_Para_sp_ASF519_V1

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Seq: KB822571.1 Parabacteroides sp. ASF519 genomic scaffold acLZc-supercont1.1, whole genome shotgun sequence (6866657 bp)
Overview 1 RT 1: 1-5538 bp 2 RT 2: 921619-927700 bp 3 RT 3: 3249870-3258917 bp 4 RT 4: 3484437-3497931 bp 5 RT 5: 4220495-4229812 bp 6 RT 6: 5736580-5741365 bp 7 RT 7: 6480057-6486403 bp 8 RT 8: 6861749-6865606 bp Neighborhood of RT #1 [1, 5549] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Neighborhood of RT #2 [921619, 928356] thiL Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII PRK09183 COG4584 Neighborhood of RT #3 [3249870, 3258943] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Neighborhood of RT #4 [3484437, 3497960] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Neighborhood of RT #5 [4220495, 4229841] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Neighborhood of RT #6 [5736580, 5741365] ABC_ABC_ChvD Arm-DNA-bind_5 Phage_int_SAM_5 RVT-GII Intron_maturas2 INTN1_C_like Neighborhood of RT #7 [6480057, 6486429] DUF4134 RVT_N RVT-GII GIIM DUF4134 Bac_Flav_CT_G Neighborhood of RT #8 [6861749, 6865656] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 1-1272 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-1264 bp Feature: domain Description: Bac_Flav_CT_G Location: 4-1 264 bp Feature: gene Location: 1841-3664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-2927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 05-2927 bp Feature: domain Description: Intron_maturas2 Location: 3101-3344 bp Feature: domain Description: Intron_maturas2 Location: 31 01 -3344 bp Feature: domain Description: HNHc Note: nucleases Location: 3455-3626 bp Feature: domain Description: HNHc Note: nucleases Location: 3455-3626 bp Feature: gene Location: 3908-4534 bp Feature: domain Description: DUF4141 Location: 3920-4073 bp Feature: domain Description: DUF41 41 Location: 3920-4073 bp Feature: gene Location: 4554-5549 bp Feature: domain Description: Bac_Flav_CT_J Location: 4575-5538 bp Feature: domain Description: Bac_Flav_CT_J Location: 4575-5538 bp Feature: gene Location: 921619-922650 bp Feature: domain Description: thiL Location: 921652-922639 bp Feature: domain Description: thiL Location: 921 652-922639 bp Feature: gene Location: 923037-924053 bp Feature: domain Description: Arm-DNA-bind_5 Location: 923067-923316 bp Feature: domain Description: Arm-DNA-bind_5 Location: 923067-92331 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 923364-923673 bp Feature: domain Description: Phage_int_SAM_5 Location: 923364-923673 bp Feature: domain Description: INTN1_C_like Location: 923724-924030 bp Feature: domain Description: INTN1 _C_like Location: 923724-924030 bp Feature: gene Location: 924596-925939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924860-925682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924860-925682 bp Feature: gene Location: 926036-926827 bp Feature: domain Description: PRK09183 Location: 926051-926768 bp Feature: domain Description: PRK091 83 Location: 926051 -926768 bp Feature: gene Location: 926824-928356 bp Feature: domain Description: COG4584 Location: 927145-927700 bp Feature: domain Description: COG4584 Location: 9271 45-927700 bp Feature: gene Location: 3249870-3251441 bp Feature: domain Description: Bac_Flav_CT_G Location: 3249873-3251439 bp Feature: domain Description: Bac_Flav_CT_G Location: 3249873-3251 439 bp Feature: gene Location: 3251463-3251813 bp Feature: domain Description: Bac_Flav_CT_G Location: 3251466-3251805 bp Feature: domain Description: Bac_Flav_CT_G Location: 3251 466-3251 805 bp Feature: gene Location: 3252382-3254205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3252646-3253468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3252646-3253468 bp Feature: domain Description: Intron_maturas2 Location: 3253642-3253885 bp Feature: domain Description: Intron_maturas2 Location: 3253642-3253885 bp Feature: domain Description: HNHc Note: nucleases Location: 3253996-3254167 bp Feature: domain Description: HNHc Note: nucleases Location: 3253996-32541 67 bp Feature: gene Location: 3254450-3254581 bp Feature: gene Location: 3254582-3254857 bp Feature: gene Location: 3254862-3255074 bp Feature: domain Description: DUF4141 Location: 3254874-3255030 bp Feature: domain Description: DUF41 41 Location: 3254874-3255030 bp Feature: gene Location: 3255698-3257380 bp Feature: RT Description: RVT_N Location: 3255752-3255995 bp Feature: RT Description: RVT_N Location: 3255752-3255995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256040-3256694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256040-3256694 bp Feature: domain Description: GIIM Note: maturase Location: 3256748-3256979 bp Feature: domain Description: GIIM Note: maturase Location: 3256748-3256979 bp Feature: gene Location: 3257364-3257906 bp Feature: gene Location: 3257930-3258943 bp Feature: domain Description: Bac_Flav_CT_J Location: 3257951-3258917 bp Feature: domain Description: Bac_Flav_CT_J Location: 3257951 -325891 7 bp Feature: gene Location: 3484437-3485165 bp Feature: gene Location: 3485367-3485603 bp Feature: domain Description: DUF4134 Location: 3485412-3485589 bp Feature: domain Description: DUF41 34 Location: 348541 2-3485589 bp Feature: gene Location: 3486219-3487874 bp Feature: RT Description: RVT_N Location: 3486276-3486513 bp Feature: RT Description: RVT_N Location: 3486276-348651 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3486564-3487212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3486564-348721 2 bp Feature: domain Description: GIIM Note: maturase Location: 3487269-3487500 bp Feature: domain Description: GIIM Note: maturase Location: 3487269-3487500 bp Feature: gene Location: 3487871-3488113 bp Feature: domain Description: DUF4134 Location: 3488018-3488108 bp Feature: domain Description: DUF41 34 Location: 348801 8-34881 08 bp Feature: gene Location: 3488125-3488457 bp Feature: domain Description: DUF4133 Location: 3488143-3488413 bp Feature: domain Description: DUF41 33 Location: 34881 43-348841 3 bp Feature: gene Location: 3488454-3490853 bp Feature: domain Description: Bac_Flav_CT_G Location: 3488457-3490845 bp Feature: domain Description: Bac_Flav_CT_G Location: 3488457-3490845 bp Feature: gene Location: 3491422-3493245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3491686-3492508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3491 686-3492508 bp Feature: domain Description: Intron_maturas2 Location: 3492682-3492925 bp Feature: domain Description: Intron_maturas2 Location: 3492682-3492925 bp Feature: domain Description: HNHc Note: nucleases Location: 3493036-3493207 bp Feature: domain Description: HNHc Note: nucleases Location: 3493036-3493207 bp Feature: gene Location: 3493504-3493884 bp Feature: domain Description: DUF3876 Location: 3493585-3493849 bp Feature: domain Description: DUF3876 Location: 3493585-3493849 bp Feature: gene Location: 3493908-3494120 bp Feature: domain Description: DUF4141 Location: 3493920-3494076 bp Feature: domain Description: DUF41 41 Location: 3493920-3494076 bp Feature: gene Location: 3494744-3496426 bp Feature: RT Description: RVT_N Location: 3494798-3495041 bp Feature: RT Description: RVT_N Location: 3494798-3495041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495086-3495740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495086-3495740 bp Feature: domain Description: GIIM Note: maturase Location: 3495794-3496025 bp Feature: domain Description: GIIM Note: maturase Location: 3495794-3496025 bp Feature: gene Location: 3496410-3496952 bp Feature: gene Location: 3496956-3497960 bp Feature: domain Description: Bac_Flav_CT_J Location: 3496962-3497931 bp Feature: domain Description: Bac_Flav_CT_J Location: 3496962-3497931 bp Feature: gene Location: 4220495-4222333 bp Feature: domain Description: Bac_Flav_CT_G Location: 4220498-4222331 bp Feature: domain Description: Bac_Flav_CT_G Location: 4220498-4222331 bp Feature: gene Location: 4222355-4222705 bp Feature: domain Description: Bac_Flav_CT_G Location: 4222358-4222697 bp Feature: domain Description: Bac_Flav_CT_G Location: 4222358-4222697 bp Feature: gene Location: 4223274-4225097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4223538-4224360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4223538-4224360 bp Feature: domain Description: Intron_maturas2 Location: 4224534-4224777 bp Feature: domain Description: Intron_maturas2 Location: 4224534-4224777 bp Feature: domain Description: HNHc Note: nucleases Location: 4224888-4225059 bp Feature: domain Description: HNHc Note: nucleases Location: 4224888-4225059 bp Feature: gene Location: 4225343-4225474 bp Feature: gene Location: 4225475-4225750 bp Feature: gene Location: 4225788-4225913 bp Feature: domain Description: DUF4141 Location: 4225794-4225911 bp Feature: domain Description: DUF41 41 Location: 4225794-422591 1 bp Feature: gene Location: 4226591-4228273 bp Feature: RT Description: RVT_N Location: 4226645-4226888 bp Feature: RT Description: RVT_N Location: 4226645-4226888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4226933-4227587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4226933-4227587 bp Feature: domain Description: GIIM Note: maturase Location: 4227641-4227872 bp Feature: domain Description: GIIM Note: maturase Location: 4227641 -4227872 bp Feature: gene Location: 4228257-4228799 bp Feature: gene Location: 4228828-4229841 bp Feature: domain Description: Bac_Flav_CT_J Location: 4228849-4229812 bp Feature: domain Description: Bac_Flav_CT_J Location: 4228849-422981 2 bp Feature: gene Location: 5736580-5738268 bp Feature: domain Description: ABC_ABC_ChvD Location: 5736598-5738257 bp Feature: domain Description: ABC_ABC_ChvD Location: 5736598-5738257 bp Feature: gene Location: 5738950-5739516 bp Feature: domain Description: Arm-DNA-bind_5 Location: 5738983-5739235 bp Feature: domain Description: Arm-DNA-bind_5 Location: 5738983-5739235 bp Feature: domain Description: Phage_int_SAM_5 Location: 5739274-5739505 bp Feature: domain Description: Phage_int_SAM_5 Location: 5739274-5739505 bp Feature: gene Location: 5739513-5740823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5739516-5740089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573951 6-5740089 bp Feature: domain Description: Intron_maturas2 Location: 5740164-5740470 bp Feature: domain Description: Intron_maturas2 Location: 57401 64-5740470 bp Feature: gene Location: 5740813-5741067 bp Feature: domain Description: INTN1_C_like Location: 5740933-5741011 bp Feature: domain Description: INTN1 _C_like Location: 5740933-5741 01 1 bp Feature: gene Location: 5741183-5741365 bp Feature: gene Location: 6480057-6480683 bp Feature: gene Location: 6480848-6481063 bp Feature: domain Description: DUF4134 Location: 6480866-6481049 bp Feature: domain Description: DUF41 34 Location: 6480866-6481 049 bp Feature: gene Location: 6481679-6483334 bp Feature: RT Description: RVT_N Location: 6481736-6481973 bp Feature: RT Description: RVT_N Location: 6481 736-6481 973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6482024-6482672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6482024-6482672 bp Feature: domain Description: GIIM Note: maturase Location: 6482729-6482960 bp Feature: domain Description: GIIM Note: maturase Location: 6482729-6482960 bp Feature: gene Location: 6483331-6483573 bp Feature: domain Description: DUF4134 Location: 6483478-6483568 bp Feature: domain Description: DUF41 34 Location: 6483478-6483568 bp Feature: gene Location: 6483733-6486429 bp Feature: domain Description: Bac_Flav_CT_G Location: 6483919-6486403 bp Feature: domain Description: Bac_Flav_CT_G Location: 648391 9-6486403 bp Feature: gene Location: 6861749-6862420 bp Feature: gene Location: 6862585-6862800 bp Feature: domain Description: DUF4134 Location: 6862606-6862786 bp Feature: domain Description: DUF41 34 Location: 6862606-6862786 bp Feature: gene Location: 6863416-6865071 bp Feature: RT Description: RVT_N Location: 6863473-6863710 bp Feature: RT Description: RVT_N Location: 6863473-686371 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6863761-6864409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6863761 -6864409 bp Feature: domain Description: GIIM Note: maturase Location: 6864466-6864697 bp Feature: domain Description: GIIM Note: maturase Location: 6864466-6864697 bp Feature: gene Location: 6865068-6865310 bp Feature: domain Description: DUF4134 Location: 6865215-6865305 bp Feature: domain Description: DUF41 34 Location: 686521 5-6865305 bp Feature: gene Location: 6865321-6865656 bp Feature: domain Description: DUF4133 Location: 6865339-6865606 bp Feature: domain Description: DUF41 33 Location: 6865339-6865606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782), thiL (TIGR01379), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)
PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT_N (pfam13655), GIIM (pfam08388), DUF4134 (pfam13572), DUF4133 (pfam13571), DUF3876 (pfam12992), ABC_ABC_ChvD (TIGR03719)