myRT

myRT report for GCA_000371445.1_Clos_hath_12489931_V1

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Seq: KB850950.1 Clostridium hathewayi 12489931 genomic scaffold actYl-supercont1.1, whole genome shotgun sequence (2718326 bp)
Overview 1 RT 1: 336579-341767 bp Neighborhood of RT #1 [336579, 341767] PRK06545 PRK14806 RVT-Retrons DUF2871 Feature: gene Location: 336579-337676 bp Feature: domain Description: PRK06545 Location: 336594-337650 bp Feature: domain Description: PRK06545 Location: 336594-337650 bp Feature: gene Location: 337700-338977 bp Feature: domain Description: PRK14806 Location: 337712-338954 bp Feature: domain Description: PRK1 4806 Location: 33771 2-338954 bp Feature: gene Location: 339285-340295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 339450-340005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 339450-340005 bp Feature: gene Location: 340639-341082 bp Feature: domain Description: DUF2871 Location: 340675-341065 bp Feature: domain Description: DUF2871 Location: 340675-341 065 bp Feature: gene Location: 341084-341767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06545 (prephenate dehydrogenase; Validated), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), RVT-Retrons, DUF2871 (pfam11070)

Seq: KB850952.1 Clostridium hathewayi 12489931 genomic scaffold actYl-supercont1.3, whole genome shotgun sequence (1122143 bp)
Overview 1 RT 1: 476875-483850 bp Neighborhood of RT #1 [476875, 483855] FadR ILVD_EDD RVT-GII GIIM DUF4091 UgpE Feature: gene Location: 476875-477585 bp Feature: domain Description: FadR Location: 476905-477568 bp Feature: domain Description: FadR Location: 476905-477568 bp Feature: gene Location: 477715-479436 bp Feature: domain Description: ILVD_EDD Location: 477808-479422 bp Feature: domain Description: ILVD_EDD Location: 477808-47942 2 bp Feature: gene Location: 479516-480820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479717-480335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479717-480335 bp Feature: domain Description: GIIM Note: maturase Location: 480389-480599 bp Feature: domain Description: GIIM Note: maturase Location: 480389-480599 bp Feature: gene Location: 481343-483025 bp Feature: domain Description: DUF4091 Location: 482642-482858 bp Feature: domain Description: DUF4091 Location: 482 642 -482 858 bp Feature: gene Location: 483040-483855 bp Feature: domain Description: UgpE Location: 483067-483850 bp Feature: domain Description: UgpE Location: 483067-483850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FadR (COG2186), ILVD_EDD (pfam00920), RVT-GII, GIIM (pfam08388), DUF4091 (pfam13320), UgpE (COG0395)

Seq: KB850951.1 Clostridium hathewayi 12489931 genomic scaffold actYl-supercont1.2, whole genome shotgun sequence (2689799 bp)
Overview 1 RT 1: 321535-327078 bp 2 RT 2: 530381-536585 bp 3 RT 3: 2522495-2528859 bp Neighborhood of RT #1 [321535, 327078] TraX IMPase RVT-GII GIIM HTH_16 Neighborhood of RT #2 [530381, 536596] PurR PRK05571 RVT-GII GIIM YesR YesN YesN Neighborhood of RT #3 [2522495, 2529029] MNHE YjbM RVT-GII GIIM 2_5_RNA_ligase2 COG3547 COG3547 Feature: gene Location: 321535-322305 bp Feature: domain Description: TraX Location: 321634-322288 bp Feature: domain Description: TraX Location: 3 2163 4-3 22288 bp Feature: gene Location: 322437-323189 bp Feature: domain Description: IMPase Location: 322485-323142 bp Feature: domain Description: IMPase Location: 3 22485-3 23 142 bp Feature: gene Location: 324593-325897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324794-325412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 24794-3 25412 bp Feature: domain Description: GIIM Note: maturase Location: 325466-325676 bp Feature: domain Description: GIIM Note: maturase Location: 3 25466-3 25676 bp Feature: gene Location: 326126-326332 bp Feature: domain Description: HTH_16 Location: 326141-326300 bp Feature: domain Description: HTH_16 Location: 3 26141-3 263 00 bp Feature: gene Location: 326722-327078 bp Feature: gene Location: 530381-531418 bp Feature: domain Description: PurR Location: 530387-531386 bp Feature: domain Description: PurR Location: 53 03 87-53 13 86 bp Feature: gene Location: 531442-531879 bp Feature: domain Description: PRK05571 Location: 531445-531874 bp Feature: domain Description: PRK05571 Location: 53 1445-53 1874 bp Feature: gene Location: 532385-533776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532700-533327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 2700-53 3 3 27 bp Feature: domain Description: GIIM Note: maturase Location: 533381-533600 bp Feature: domain Description: GIIM Note: maturase Location: 53 3 3 81-53 3 600 bp Feature: gene Location: 533945-535063 bp Feature: domain Description: YesR Location: 534053-535055 bp Feature: domain Description: YesR Location: 53 4053 -53 5055 bp Feature: gene Location: 535088-536596 bp Feature: domain Description: YesN Location: 535091-535517 bp Feature: domain Description: YesN Location: 53 5091-53 5517 bp Feature: domain Description: YesN Location: 536156-536585 bp Feature: domain Description: YesN Location: 53 6156-53 6585 bp Feature: gene Location: 2522495-2522980 bp Feature: domain Description: MNHE Location: 2522507-2522906 bp Feature: domain Description: MNHE Location: 2522507-2522906 bp Feature: gene Location: 2523182-2524456 bp Feature: domain Description: YjbM Location: 2523197-2523758 bp Feature: domain Description: YjbM Location: 2523 197-2523 758 bp Feature: gene Location: 2524550-2525941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524865-2525492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524865-2525492 bp Feature: domain Description: GIIM Note: maturase Location: 2525546-2525762 bp Feature: domain Description: GIIM Note: maturase Location: 2525546-2525762 bp Feature: gene Location: 2526924-2527460 bp Feature: domain Description: 2_5_RNA_ligase2 Location: 2527035-2527449 bp Feature: domain Description: 2_5_RNA_ligase2 Location: 252703 5-2527449 bp Feature: gene Location: 2527755-2529029 bp Feature: domain Description: COG3547 Location: 2527782-2528211 bp Feature: domain Description: COG3 547 Location: 2527782-2528211 bp Feature: domain Description: COG3547 Location: 2528424-2528859 bp Feature: domain Description: COG3 547 Location: 2528424-2528859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), IMPase (cd01639), RVT-GII, GIIM (pfam08388), HTH_16 (pfam12645), PurR (COG1609), PRK05571 (ribose-5-phosphate isomerase B; Provisional), YesR (COG4225), YesN (COG4753), MNHE (pfam01899)
YjbM (COG2357), 2_5_RNA_ligase2 (pfam13563), COG3547 (Transposase )