myRT

myRT report for GCA_000371505.1_Clos_clos_90A8_V1

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Seq: KB850994.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.26, whole genome shotgun sequence (68851 bp)
Overview 1 RT 1: 65090-68578 bp Neighborhood of RT #1 [65090, 68598] HTH_XRE RVT-GII Intron_maturas2 HNHc Feature: gene Location: 65090-65446 bp Ori: ENZ07181.1 Feature: domain Description: HTH_XRE Location: 65120-65291 bp Feature: domain Description: HTH_XRE Location: 651 20-65291 bp Feature: gene Location: 65636-66556 bp Feature: gene Location: 66796-68598 bp Ori: ENZ07183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67063-67879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67063-67879 bp Feature: domain Description: Intron_maturas2 Location: 68014-68254 bp Feature: domain Description: Intron_maturas2 Location: 6801 4-68254 bp Feature: domain Description: HNHc Note: nucleases Location: 68428-68578 bp Feature: domain Description: HNHc Note: nucleases Location: 68428-68578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KB851009.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.4, whole genome shotgun sequence (379603 bp)
Overview 1 RT 1: 254-3357 bp 2 RT 2: 155124-159057 bp 3 RT 3: 301046-307082 bp 4 RT 4: 340204-345448 bp Neighborhood of RT #1 [254, 3545] RVT-GII Intron_maturas2 HNHc Relaxase Cys_rich_VLP Neighborhood of RT #2 [155124, 159068] RVT-GII pcrA pcrA Neighborhood of RT #3 [301046, 307090] RVT-GII HNHc DUF3852 Neighborhood of RT #4 [340204, 345519] MdlB VanZ RVT-GII excise Recombinase Feature: gene Location: 254-2056 bp Ori: ENZ18582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 1-1337 bp Feature: domain Description: Intron_maturas2 Location: 1472-1712 bp Feature: domain Description: Intron_maturas2 Location: 1472 -1712 bp Feature: domain Description: HNHc Note: nucleases Location: 1886-2036 bp Feature: domain Description: HNHc Note: nucleases Location: 1886-2 036 bp Feature: gene Location: 2200-3177 bp Ori: ENZ18583.1 Feature: domain Description: Relaxase Location: 2218-2569 bp Feature: domain Description: Relaxase Location: 2 2 18-2 569 bp Feature: gene Location: 3174-3545 bp Ori: ENZ18584.1 Feature: domain Description: Cys_rich_VLP Location: 3201-3357 bp Feature: domain Description: Cys_rich_VLP Location: 32 01-3357 bp Feature: gene Location: 155124-155630 bp Ori: ENZ18264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155334-155628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155334-15562 8 bp Feature: gene Location: 156203-156517 bp Feature: gene Location: 156726-159068 bp Ori: ENZ18266.1 Feature: domain Description: pcrA Location: 156741-158649 bp Feature: domain Description: pcrA Location: 156741-158649 bp Feature: domain Description: pcrA Location: 158895-159057 bp Feature: domain Description: pcrA Location: 158895-159057 bp Feature: gene Location: 301046-301648 bp Feature: gene Location: 301599-303344 bp Feature: gene Location: 304074-305960 bp Ori: ENZ17914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304389-305118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304389-305118 bp Feature: domain Description: HNHc Note: nucleases Location: 305673-305841 bp Feature: domain Description: HNHc Note: nucleases Location: 305673-305841 bp Feature: gene Location: 306191-306655 bp Feature: gene Location: 306755-307090 bp Ori: ENZ17916.1 Feature: domain Description: DUF3852 Location: 306761-307082 bp Feature: domain Description: DUF3852 Location: 306761-307082 bp Feature: gene Location: 340204-342018 bp Ori: ENZ17952.1 Feature: domain Description: MdlB Location: 340219-341995 bp Feature: domain Description: MdlB Location: 3402 19-341995 bp Feature: gene Location: 342128-342619 bp Ori: ENZ17953.1 Feature: domain Description: VanZ Location: 342161-342509 bp Feature: domain Description: VanZ Location: 342 161-342 509 bp Feature: gene Location: 343526-343948 bp Ori: ENZ17954.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343826-343874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34382 6-343874 bp Feature: gene Location: 343956-344723 bp Ori: ENZ17955.1 Feature: domain Description: excise Location: 344562-344643 bp Feature: domain Description: excise Location: 344562 -344643 bp Feature: gene Location: 344968-345519 bp Ori: ENZ17956.1 Feature: domain Description: Recombinase Location: 345082-345448 bp Feature: domain Description: Recombinase Location: 345082 -345448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432), Cys_rich_VLP (pfam14194), pcrA (TIGR01073), DUF3852 (pfam12963), MdlB (COG1132), VanZ (pfam04892), excise (TIGR01764)
Recombinase (pfam07508)

Seq: KB850987.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.2, whole genome shotgun sequence (375402 bp)
Overview 1 RT 1: 57820-63715 bp 2 RT 2: 145474-151441 bp Neighborhood of RT #1 [57820, 63715] M48B_HtpX_like RVT-GII Intron_maturas2 HNHc Relaxase Neighborhood of RT #2 [145474, 151461] NTP_transferase APH RVT-GII GIIM PBP2_phosphate_like_1 PstC Feature: gene Location: 57820-58689 bp Ori: ENZ19600.1 Feature: domain Description: M48B_HtpX_like Location: 57901-58663 bp Feature: domain Description: M48B_HtpX_like Location: 57901-58663 bp Feature: gene Location: 58968-59921 bp Feature: gene Location: 60131-61933 bp Ori: ENZ19602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60398-61214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603 98-61214 bp Feature: domain Description: Intron_maturas2 Location: 61349-61589 bp Feature: domain Description: Intron_maturas2 Location: 613 49-61589 bp Feature: domain Description: HNHc Note: nucleases Location: 61763-61913 bp Feature: domain Description: HNHc Note: nucleases Location: 61763 -61913 bp Feature: gene Location: 62964-63368 bp Ori: ENZ19128.1 Feature: domain Description: Relaxase Location: 63090-63333 bp Feature: domain Description: Relaxase Location: 63 090-63 3 3 3 bp Feature: gene Location: 63431-63715 bp Feature: gene Location: 145474-146409 bp Ori: ENZ19203.1 Feature: domain Description: NTP_transferase Location: 145498-146260 bp Feature: domain Description: NTP_transferase Location: 145498-146260 bp Feature: gene Location: 146406-147512 bp Ori: ENZ19204.1 Feature: domain Description: APH Location: 146487-147195 bp Feature: domain Description: APH Location: 146487-147195 bp Feature: gene Location: 148070-149230 bp Ori: ENZ19205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148160-148775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148160-148775 bp Feature: domain Description: GIIM Note: maturase Location: 148838-149066 bp Feature: domain Description: GIIM Note: maturase Location: 14883 8-149066 bp Feature: gene Location: 149539-150495 bp Ori: ENZ19206.1 Feature: domain Description: PBP2_phosphate_like_1 Location: 149764-150475 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 149764-150475 bp Feature: gene Location: 150523-151461 bp Ori: ENZ19207.1 Feature: domain Description: PstC Location: 150544-151441 bp Feature: domain Description: PstC Location: 150544-151441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M48B_HtpX_like (cd07339), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432), NTP_transferase (pfam00483), APH (pfam01636), GIIM (pfam08388), PBP2_phosphate_like_1 (cd13653), PstC (COG0573)

Seq: KB850980.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.13, whole genome shotgun sequence (190597 bp)
Overview 1 RT 1: 141205-149873 bp Neighborhood of RT #1 [141205, 149884] nagB PurR RVT-GII GIIM E_set_CDase_PDE_N AmyAc_CMD HflB Feature: gene Location: 141205-141936 bp Ori: ENZ12165.1 Feature: domain Description: nagB Location: 141208-141928 bp Feature: domain Description: nagB Location: 14 1208-14 1928 bp Feature: gene Location: 141943-142995 bp Ori: ENZ12166.1 Feature: domain Description: PurR Location: 141958-142972 bp Feature: domain Description: PurR Location: 14 1958-14 2972 bp Feature: gene Location: 143822-144970 bp Ori: ENZ12167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143912-144527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 3912-14 4 527 bp Feature: domain Description: GIIM Note: maturase Location: 144590-144818 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 590-14 4 818 bp Feature: gene Location: 145547-147673 bp Ori: ENZ12168.1 Feature: domain Description: E_set_CDase_PDE_N Location: 145604-145892 bp Feature: domain Description: E_set_CDase_PDE_N Location: 14 5604 -14 5892 bp Feature: domain Description: AmyAc_CMD Location: 145928-147335 bp Feature: domain Description: AmyAc_CMD Location: 14 5928-14 7335 bp Feature: gene Location: 148070-149884 bp Ori: ENZ12169.1 Feature: domain Description: HflB Location: 148115-149873 bp Feature: domain Description: HflB Location: 14 8115-14 9873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nagB (TIGR00502), PurR (COG1609), RVT-GII, GIIM (pfam08388), E_set_CDase_PDE_N (cd02857), AmyAc_CMD (cd11338), HflB (COG0465)

Seq: KB851022.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.9, whole genome shotgun sequence (254783 bp)
Overview 1 RT 1: 30752-35840 bp Neighborhood of RT #1 [30752, 35863] IS285 RVT-GII GIIM RVT-GII SAPR CoxS Feature: gene Location: 30752-31996 bp Ori: ENZ13547.1 Feature: domain Description: IS285 Location: 30821-31988 bp Feature: domain Description: IS285 Location: 30821-31988 bp Feature: gene Location: 32058-32201 bp Feature: gene Location: 32837-33412 bp Ori: ENZ13549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32843-32957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32843-3295 7 bp Feature: domain Description: GIIM Note: maturase Location: 33020-33248 bp Feature: domain Description: GIIM Note: maturase Location: 33020-33248 bp Feature: gene Location: 33611-33997 bp Ori: ENZ13550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33701-33995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33701-33995 bp Feature: gene Location: 34583-35038 bp Ori: ENZ13551.1 Feature: domain Description: SAPR Location: 34601-34946 bp Feature: domain Description: SAPR Location: 34601-34946 bp Feature: gene Location: 35378-35863 bp Ori: ENZ13552.1 Feature: domain Description: CoxS Location: 35393-35840 bp Feature: domain Description: CoxS Location: 35 393-35 840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), SAPR (COG3947), CoxS (COG2080)

Seq: KB851004.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.35, whole genome shotgun sequence (26957 bp)
Overview 1 RT 1: 22234-26679 bp Neighborhood of RT #1 [22234, 26699] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22234-23457 bp Feature: gene Location: 23593-24786 bp Feature: gene Location: 24897-26699 bp Ori: ENZ05187.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25164-25980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2516 4-25980 bp Feature: domain Description: Intron_maturas2 Location: 26115-26355 bp Feature: domain Description: Intron_maturas2 Location: 26 115-26 355 bp Feature: domain Description: HNHc Note: nucleases Location: 26529-26679 bp Feature: domain Description: HNHc Note: nucleases Location: 26 529-26 6 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KB850985.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.18, whole genome shotgun sequence (130072 bp)
Overview 1 RT 1: 62136-68536 bp Neighborhood of RT #1 [62136, 68538] YitT_membrane SoxR RVT-GII GIIM YrpB PRK05654 PRK05724 Feature: gene Location: 62136-62825 bp Ori: ENZ09198.1 Feature: domain Description: YitT_membrane Location: 62211-62763 bp Feature: domain Description: YitT_membrane Location: 62211-627 63 bp Feature: gene Location: 62853-63689 bp Ori: ENZ09199.1 Feature: domain Description: SoxR Location: 62889-63183 bp Feature: domain Description: SoxR Location: 62889-63183 bp Feature: gene Location: 64024-64917 bp Ori: ENZ09200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64030-64462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64030-64462 bp Feature: domain Description: GIIM Note: maturase Location: 64525-64753 bp Feature: domain Description: GIIM Note: maturase Location: 64525-647 53 bp Feature: gene Location: 65681-66814 bp Ori: ENZ09201.1 Feature: domain Description: YrpB Location: 65693-66800 bp Feature: domain Description: YrpB Location: 65693-66800 bp Feature: gene Location: 66814-68538 bp Ori: ENZ09202.1 Feature: domain Description: PRK05654 Location: 66877-67690 bp Feature: domain Description: PRK05654 Location: 6687 7 -67 690 bp Feature: domain Description: PRK05724 Location: 67759-68536 bp Feature: domain Description: PRK057 24 Location: 67 7 59-68536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YitT_membrane (pfam02588), SoxR (TIGR01950), RVT-GII, GIIM (pfam08388), YrpB (COG2070), PRK05654 (acetyl-CoA carboxylase carboxyltransferase subunit beta), PRK05724 (acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated)

Seq: KB851020.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.7, whole genome shotgun sequence (297023 bp)
Overview 1 RT 1: 265146-271765 bp Neighborhood of RT #1 [265146, 271932] VirD4 RVT-GII HNHc PrgI Feature: gene Location: 265146-266954 bp Ori: ENZ14016.1 Feature: domain Description: VirD4 Location: 265362-266835 bp Feature: domain Description: VirD4 Location: 265362-2668 35 bp Feature: gene Location: 266941-267111 bp Feature: gene Location: 268380-270266 bp Ori: ENZ14018.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268713-269451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268 713-269451 bp Feature: domain Description: HNHc Note: nucleases Location: 269997-270150 bp Feature: domain Description: HNHc Note: nucleases Location: 269997-270150 bp Feature: gene Location: 270587-271456 bp Feature: gene Location: 271477-271932 bp Ori: ENZ14020.1 Feature: domain Description: PrgI Location: 271492-271765 bp Feature: domain Description: PrgI Location: 271492-271765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNHc (smart00507), PrgI (pfam12666)

Seq: KB850998.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.3, whole genome shotgun sequence (378271 bp)
Overview 1 RT 1: 374571-377998 bp Neighborhood of RT #1 [374571, 378018] XRE DBD_HTH RVT-GII Intron_maturas2 HNHc Feature: gene Location: 374571-374849 bp Ori: ENZ18846.1 Feature: domain Description: XRE Location: 374574-374721 bp Feature: domain Description: XRE Location: 374574-374721 bp Feature: domain Description: DBD_HTH Location: 374745-374835 bp Feature: domain Description: DBD_HTH Location: 374745-374835 bp Feature: gene Location: 375050-376003 bp Feature: gene Location: 376216-378018 bp Ori: ENZ18848.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376483-377299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376483-37729 9 bp Feature: domain Description: Intron_maturas2 Location: 377434-377674 bp Feature: domain Description: Intron_maturas2 Location: 377434-377674 bp Feature: domain Description: HNHc Note: nucleases Location: 377848-377998 bp Feature: domain Description: HNHc Note: nucleases Location: 377848-3779 9 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), DBD_HTH (pfam18430), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KB851006.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.37, whole genome shotgun sequence (21889 bp)
Overview 1 RT 1: 254-3478 bp Neighborhood of RT #1 [254, 3510] RVT-GII Intron_maturas2 HNHc Relaxase HTH_16 Feature: gene Location: 254-2056 bp Ori: ENZ05003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-1337 bp Feature: domain Description: Intron_maturas2 Location: 1472-1712 bp Feature: domain Description: Intron_maturas2 Location: 1472-1712 bp Feature: domain Description: HNHc Note: nucleases Location: 1886-2036 bp Feature: domain Description: HNHc Note: nucleases Location: 1886-2036 bp Feature: gene Location: 2257-3195 bp Ori: ENZ05004.1 Feature: domain Description: Relaxase Location: 2260-2572 bp Feature: domain Description: Relaxase Location: 2260-2572 bp Feature: gene Location: 3259-3510 bp Ori: ENZ05005.1 Feature: domain Description: HTH_16 Location: 3286-3478 bp Feature: domain Description: HTH_16 Location: 3286-3478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432), HTH_16 (pfam12645)

Seq: KB850983.1 Clostridium clostridioforme 90A8 genomic scaffold acBRe-supercont1.16, whole genome shotgun sequence (147879 bp)
Overview 1 RT 1: 70940-74622 bp 2 RT 2: 140614-143999 bp Neighborhood of RT #1 [70940, 74624] PRK13265 PRK14717 RVT-GII GIIM PrdX_deacylase TIGR00004 Neighborhood of RT #2 [140614, 144067] RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 70940-71071 bp Ori: ENZ10252.1 Feature: domain Description: PRK13265 Location: 70943-71069 bp Feature: domain Description: PRK13265 Location: 70943-71069 bp Feature: gene Location: 71087-71410 bp Ori: ENZ10253.1 Feature: domain Description: PRK14717 Location: 71090-71408 bp Feature: domain Description: PRK14717 Location: 71090-71408 bp Feature: gene Location: 71937-73217 bp Ori: ENZ10254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72147-72762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72147-72762 bp Feature: domain Description: GIIM Note: maturase Location: 72825-73053 bp Feature: domain Description: GIIM Note: maturase Location: 72825-73053 bp Feature: gene Location: 73337-73933 bp Ori: ENZ10255.1 Feature: domain Description: PrdX_deacylase Location: 73448-73907 bp Feature: domain Description: PrdX_deacylase Location: 73448-73907 bp Feature: gene Location: 74256-74624 bp Ori: ENZ10256.1 Feature: domain Description: TIGR00004 Location: 74262-74622 bp Feature: domain Description: TIGR00004 Location: 74262-74622 bp Feature: gene Location: 140614-140889 bp Feature: gene Location: 141126-141398 bp Feature: gene Location: 141349-141984 bp Ori: ENZ10320.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141574-141862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141574-141862 bp Feature: gene Location: 142090-143100 bp Ori: ENZ10321.1 Feature: domain Description: Phage_int_SAM_1 Location: 142135-142387 bp Feature: domain Description: Phage_int_SAM_1 Location: 142135-142387 bp Feature: domain Description: INT_RitC_C_like Location: 142468-143020 bp Feature: domain Description: INT_RitC_C_like Location: 142468-143020 bp Feature: gene Location: 143087-144067 bp Ori: ENZ10322.1 Feature: domain Description: INT_RitB_C_like Location: 143423-143999 bp Feature: domain Description: INT_RitB_C_like Location: 143423-143999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13265 (glycine/sarcosine/betaine reductase complex protein A; Reviewed), PRK14717 (putative glycine/sarcosine/betaine reductase complex protein A; Provisional), RVT-GII, GIIM (pfam08388), PrdX_deacylase (cd04335), TIGR00004 (reactive intermediate/imine deaminase), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)