myRT

myRT report for GCA_000371525.1_Clos_clos_90A7_V1

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Seq: KB851046.1 Clostridium clostridioforme 90A7 genomic scaffold acsOa-supercont1.2, whole genome shotgun sequence (1761752 bp)
Overview 1 RT 1: 654921-659648 bp 2 RT 2: 673845-678984 bp Neighborhood of RT #1 [654921, 659662] spoVFB NAT_SF YoaP RVT-Retrons UgpE UgpA Neighborhood of RT #2 [673845, 678984] DUF3801 VirD4 RVT-GII VirD4 Feature: gene Location: 654921-655505 bp Ori: ENZ14264.1 Feature: domain Description: spoVFB Location: 654924-655494 bp Feature: domain Description: spoVFB Location: 654924-655494 bp Feature: gene Location: 655752-656495 bp Ori: ENZ14265.1 Feature: domain Description: NAT_SF Location: 655959-656076 bp Feature: domain Description: NAT_SF Location: 655959-656076 bp Feature: domain Description: YoaP Location: 656358-656484 bp Feature: domain Description: YoaP Location: 656358-656484 bp Feature: gene Location: 656507-657514 bp Ori: ENZ14266.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 656672-657227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 656672-657227 bp Feature: gene Location: 657936-658769 bp Ori: ENZ14267.1 Feature: domain Description: UgpE Location: 657951-658764 bp Feature: domain Description: UgpE Location: 657951 -658764 bp Feature: gene Location: 658784-659662 bp Ori: ENZ14268.1 Feature: domain Description: UgpA Location: 658802-659648 bp Feature: domain Description: UgpA Location: 658802-659648 bp Feature: gene Location: 673845-674321 bp Ori: ENZ14282.1 Feature: domain Description: DUF3801 Location: 673908-674286 bp Feature: domain Description: DUF3801 Location: 673908-674286 bp Feature: gene Location: 674318-674905 bp Ori: ENZ14283.1 Feature: domain Description: VirD4 Location: 674531-674843 bp Feature: domain Description: VirD4 Location: 674531 -674843 bp Feature: gene Location: 675644-677449 bp Ori: ENZ14284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675902-676619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675902-67661 9 bp Feature: gene Location: 677472-678821 bp Ori: ENZ14285.1 Feature: domain Description: VirD4 Location: 677577-678696 bp Feature: domain Description: VirD4 Location: 677577-678696 bp Feature: gene Location: 678814-678984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395), UgpA (COG1175), DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: KB851047.1 Clostridium clostridioforme 90A7 genomic scaffold acsOa-supercont1.3, whole genome shotgun sequence (1505515 bp)
Overview 1 RT 1: 37926-41453 bp 2 RT 2: 235776-245680 bp Neighborhood of RT #1 [37926, 41542] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Neighborhood of RT #2 [235776, 245721] RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 37926-39068 bp Ori: ENZ11911.1 Feature: domain Description: PHA00653 Location: 38049-39066 bp Feature: domain Description: PHA00653 Location: 38049-39066 bp Feature: gene Location: 39109-39465 bp Ori: ENZ11912.1 Feature: domain Description: Avd_like Location: 39139-39445 bp Feature: domain Description: Avd_like Location: 39139-39445 bp Feature: gene Location: 39792-40853 bp Ori: ENZ11913.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40020-40722 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4002 0-4072 2 bp Feature: gene Location: 40878-41057 bp Feature: gene Location: 41060-41542 bp Ori: ENZ11915.1 Feature: domain Description: Phage_holin_4_1 Location: 41093-41453 bp Feature: domain Description: Phage_holin_4_1 Location: 41093-41453 bp Feature: gene Location: 235776-236543 bp Feature: gene Location: 236675-238699 bp Feature: gene Location: 239464-240066 bp Ori: ENZ11766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239674-240055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39674-2 40055 bp Feature: gene Location: 240177-241187 bp Ori: ENZ11767.1 Feature: domain Description: Phage_int_SAM_1 Location: 240222-240474 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 402 2 2 -2 40474 bp Feature: domain Description: INT_RitC_C_like Location: 240555-241107 bp Feature: domain Description: INT_RitC_C_like Location: 2 40555-2 41107 bp Feature: gene Location: 241174-242154 bp Ori: ENZ11768.1 Feature: domain Description: INT_RitB_C_like Location: 241510-242089 bp Feature: domain Description: INT_RitB_C_like Location: 2 41510-2 42 089 bp Feature: gene Location: 242147-243382 bp Ori: ENZ11769.1 Feature: domain Description: Phage_int_SAM_1 Location: 242519-242735 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 42 519-2 42 735 bp Feature: domain Description: INT_RitA_C_like Location: 242816-243347 bp Feature: domain Description: INT_RitA_C_like Location: 2 42 816-2 43347 bp Feature: gene Location: 243601-244215 bp Ori: ENZ11770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243604-243763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 43604-2 43763 bp Feature: domain Description: GIIM Note: maturase Location: 243823-244042 bp Feature: domain Description: GIIM Note: maturase Location: 2 4382 3-2 44042 bp Feature: gene Location: 244318-244791 bp Ori: ENZ11771.1 Feature: domain Description: COG3666 Location: 244342-244777 bp Feature: domain Description: COG3666 Location: 2 44342 -2 44777 bp Feature: gene Location: 244846-245721 bp Ori: ENZ11772.1 Feature: domain Description: DDE_Tnp_1_6 Location: 245329-245680 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 4532 9-2 45680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), GIIM (pfam08388)
COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: KB851045.1 Clostridium clostridioforme 90A7 genomic scaffold acsOa-supercont1.1, whole genome shotgun sequence (1919256 bp)
Overview 1 RT 1: 1347756-1352873 bp Neighborhood of RT #1 [1347756, 1353031] AraH MglA RVT-GII RVT-GII GIIM DDE_5 DDE_Tnp_1 Feature: gene Location: 1347756-1348709 bp Ori: ENZ15835.1 Feature: domain Description: AraH Location: 1347771-1348680 bp Feature: domain Description: AraH Location: 13 47771-13 48680 bp Feature: gene Location: 1348690-1349451 bp Ori: ENZ15836.1 Feature: domain Description: MglA Location: 1348702-1349431 bp Feature: domain Description: MglA Location: 13 48702-13 4943 1 bp Feature: gene Location: 1350219-1350716 bp Ori: ENZ15837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350585-1350660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 50585-13 50660 bp Feature: gene Location: 1350713-1351261 bp Ori: ENZ15838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350740-1350893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 50740-13 50893 bp Feature: domain Description: GIIM Note: maturase Location: 1350953-1351178 bp Feature: domain Description: GIIM Note: maturase Location: 13 50953 -13 51178 bp Feature: gene Location: 1351743-1352375 bp Ori: ENZ15839.1 Feature: domain Description: DDE_5 Location: 1351899-1352265 bp Feature: domain Description: DDE_5 Location: 13 51899-13 52265 bp Feature: gene Location: 1352363-1353031 bp Ori: ENZ15840.1 Feature: domain Description: DDE_Tnp_1 Location: 1352405-1352873 bp Feature: domain Description: DDE_Tnp_1 Location: 13 52405-13 52873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraH (COG1172), MglA (COG1129), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_1 (pfam01609)