myRT

myRT report for GCA_000371585.1_Clos_clos_90A3_V1

Download annotations/find similar RTs

Seq: KB851056.1 Clostridium clostridioforme 90A3 genomic scaffold acBSk-supercont1.2, whole genome shotgun sequence (1495260 bp)
Overview 1 RT 1: 63953-67515 bp 2 RT 2: 134683-139619 bp 3 RT 3: 911702-916311 bp 4 RT 4: 1298493-1302588 bp Neighborhood of RT #1 [63953, 67517] PRK13265 PRK14717 RVT-GII GIIM PrdX_deacylase TIGR00004 Neighborhood of RT #2 [134683, 139663] PRK12394 RVT-GII Resolvase Recombinase Zn_ribbon_recom rve_3 Neighborhood of RT #3 [911702, 916311] Spr RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [1298493, 1302593] RVT-GII GIIM DUF3837 Feature: gene Location: 63953-64084 bp Ori: ENZ24114.1 Feature: domain Description: PRK13265 Location: 63956-64082 bp Feature: domain Description: PRK1 3265 Location: 63956-64082 bp Feature: gene Location: 64100-64423 bp Ori: ENZ24115.1 Feature: domain Description: PRK14717 Location: 64103-64421 bp Feature: domain Description: PRK1 471 7 Location: 641 03-64421 bp Feature: gene Location: 65217-66110 bp Ori: ENZ24116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65223-65655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65223-65655 bp Feature: domain Description: GIIM Note: maturase Location: 65718-65946 bp Feature: domain Description: GIIM Note: maturase Location: 6571 8-65946 bp Feature: gene Location: 66230-66826 bp Ori: ENZ24117.1 Feature: domain Description: PrdX_deacylase Location: 66341-66800 bp Feature: domain Description: PrdX_deacylase Location: 66341 -66800 bp Feature: gene Location: 67149-67517 bp Ori: ENZ24118.1 Feature: domain Description: TIGR00004 Location: 67155-67515 bp Feature: domain Description: TIGR00004 Location: 671 55-6751 5 bp Feature: gene Location: 134683-135819 bp Ori: ENZ24045.1 Feature: domain Description: PRK12394 Location: 134695-135805 bp Feature: domain Description: PRK1 2394 Location: 1 34695-1 35805 bp Feature: gene Location: 136314-137123 bp Feature: gene Location: 137074-137406 bp Ori: ENZ24047.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137299-137404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37299-1 37404 bp Feature: gene Location: 137875-139266 bp Ori: ENZ24048.1 Feature: domain Description: Resolvase Location: 137965-138409 bp Feature: domain Description: Resolvase Location: 1 37965-1 38409 bp Feature: domain Description: Recombinase Location: 138478-138802 bp Feature: domain Description: Recombinase Location: 1 38478-1 38802 bp Feature: domain Description: Zn_ribbon_recom Location: 138853-139030 bp Feature: domain Description: Zn_ribbon_recom Location: 1 38853-1 39030 bp Feature: gene Location: 139436-139663 bp Ori: ENZ24049.1 Feature: domain Description: rve_3 Location: 139463-139619 bp Feature: domain Description: rve_3 Location: 1 39463-1 3961 9 bp Feature: gene Location: 911702-912634 bp Ori: ENZ23302.1 Feature: domain Description: Spr Location: 912281-912575 bp Feature: domain Description: Spr Location: 91 2281 -91 2575 bp Feature: gene Location: 912775-913020 bp Feature: gene Location: 913226-915013 bp Ori: ENZ23304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913493-914303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 3493-91 4303 bp Feature: domain Description: Intron_maturas2 Location: 914378-914798 bp Feature: domain Description: Intron_maturas2 Location: 91 4378-91 4798 bp Feature: domain Description: HNHc Note: nucleases Location: 914840-914993 bp Feature: domain Description: HNHc Note: nucleases Location: 91 4840-91 4993 bp Feature: gene Location: 915223-915576 bp Feature: gene Location: 915595-916311 bp Feature: gene Location: 1298493-1298978 bp Feature: gene Location: 1298979-1299695 bp Feature: gene Location: 1300711-1301604 bp Ori: ENZ22504.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1300717-1301149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30071 7-1 301 1 49 bp Feature: domain Description: GIIM Note: maturase Location: 1301212-1301440 bp Feature: domain Description: GIIM Note: maturase Location: 1 301 21 2-1 301 440 bp Feature: gene Location: 1301838-1302083 bp Feature: gene Location: 1302285-1302593 bp Ori: ENZ22506.1 Feature: domain Description: DUF3837 Location: 1302291-1302588 bp Feature: domain Description: DUF3837 Location: 1 302291 -1 302588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13265 (glycine/sarcosine/betaine reductase complex protein A; Reviewed), PRK14717 (putative glycine/sarcosine/betaine reductase complex protein A; Provisional), RVT-GII, GIIM (pfam08388), PrdX_deacylase (cd04335), TIGR00004 (reactive intermediate/imine deaminase), PRK12394 (metallo-dependent hydrolase), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
rve_3 (pfam13683), Spr (COG0791), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3837 (pfam12939)

Seq: KB851053.1 Clostridium clostridioforme 90A3 genomic scaffold acBSk-supercont1.1, whole genome shotgun sequence (1573180 bp)
Overview 1 RT 1: 1106568-1117276 bp 2 RT 2: 1328155-1334555 bp 3 RT 3: 1405730-1415013 bp 4 RT 4: 1535264-1541684 bp 5 RT 5: 1551084-1561364 bp Neighborhood of RT #1 [1106568, 1117290] MobC COG4646 KOG0390 RVT-GII Intron_maturas2 HNHc YtxK COG4646 TTRAP Neighborhood of RT #2 [1328155, 1334557] YitT_membrane SoxR RVT-GII GIIM YrpB PRK05654 PRK05724 Neighborhood of RT #3 [1405730, 1415027] HTH_21 PHA02517 RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII BglG PTS_EIIA_2 thiolase Neighborhood of RT #4 [1535264, 1541797] N6_N4_Mtase RVT-GII HNHc VirB4_CagE VirB4_CagE PrgI Neighborhood of RT #5 [1551084, 1561364] Maff2 RVT-GII Intron_maturas2 HNHc IME4 PrgI VirB4_CagE TraC-F-type RVT-GII HNHc Feature: gene Location: 1106568-1106900 bp Ori: ENZ26520.1 Feature: domain Description: MobC Location: 1106748-1106871 bp Feature: domain Description: MobC Location: 1106748-1106871 bp Feature: gene Location: 1106897-1108780 bp Ori: ENZ26521.1 Feature: domain Description: COG4646 Location: 1107008-1107428 bp Feature: domain Description: COG4646 Location: 1107008-110742 8 bp Feature: domain Description: KOG0390 Location: 1107704-1107956 bp Feature: domain Description: KOG0390 Location: 1107704-1107956 bp Feature: gene Location: 1108777-1110591 bp Ori: ENZ26522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109050-1109860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1109050-1109860 bp Feature: domain Description: Intron_maturas2 Location: 1109929-1110259 bp Feature: domain Description: Intron_maturas2 Location: 110992 9-11102 59 bp Feature: domain Description: HNHc Note: nucleases Location: 1110409-1110556 bp Feature: domain Description: HNHc Note: nucleases Location: 1110409-1110556 bp Feature: gene Location: 1111167-1117067 bp Ori: ENZ26523.1 Feature: domain Description: YtxK Location: 1114086-1114821 bp Feature: domain Description: YtxK Location: 1114086-111482 1 bp Feature: domain Description: COG4646 Location: 1114890-1117053 bp Feature: domain Description: COG4646 Location: 1114890-1117053 bp Feature: gene Location: 1117084-1117290 bp Ori: ENZ26524.1 Feature: domain Description: TTRAP Location: 1117093-1117276 bp Feature: domain Description: TTRAP Location: 1117093-11172 76 bp Feature: gene Location: 1328155-1328844 bp Ori: ENZ25359.1 Feature: domain Description: YitT_membrane Location: 1328230-1328782 bp Feature: domain Description: YitT_membrane Location: 132 82 30-132 8782 bp Feature: gene Location: 1328872-1329708 bp Ori: ENZ25360.1 Feature: domain Description: SoxR Location: 1328908-1329202 bp Feature: domain Description: SoxR Location: 132 8908-132 92 02 bp Feature: gene Location: 1330043-1330936 bp Ori: ENZ25361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330049-1330481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330049-1330481 bp Feature: domain Description: GIIM Note: maturase Location: 1330544-1330772 bp Feature: domain Description: GIIM Note: maturase Location: 1330544-1330772 bp Feature: gene Location: 1331700-1332833 bp Ori: ENZ25362.1 Feature: domain Description: YrpB Location: 1331712-1332819 bp Feature: domain Description: YrpB Location: 1331712 -1332 819 bp Feature: gene Location: 1332833-1334557 bp Ori: ENZ25363.1 Feature: domain Description: PRK05654 Location: 1332896-1333709 bp Feature: domain Description: PRK05654 Location: 1332 896-1333709 bp Feature: domain Description: PRK05724 Location: 1333778-1334555 bp Feature: domain Description: PRK0572 4 Location: 1333778-1334555 bp Feature: gene Location: 1405730-1406122 bp Ori: ENZ25433.1 Feature: domain Description: HTH_21 Location: 1405856-1406015 bp Feature: domain Description: HTH_2 1 Location: 1405856-1406015 bp Feature: gene Location: 1406180-1406515 bp Ori: ENZ25434.1 Feature: domain Description: PHA02517 Location: 1406195-1406513 bp Feature: domain Description: PHA02 517 Location: 1406195-1406513 bp Feature: gene Location: 1406683-1407342 bp Ori: ENZ25435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406686-1406893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406686-1406893 bp Feature: domain Description: GIIM Note: maturase Location: 1406947-1407166 bp Feature: domain Description: GIIM Note: maturase Location: 1406947-1407166 bp Feature: gene Location: 1407513-1408748 bp Ori: ENZ25436.1 Feature: domain Description: Phage_int_SAM_1 Location: 1407885-1408101 bp Feature: domain Description: Phage_int_SAM_1 Location: 1407885-1408101 bp Feature: domain Description: INT_RitA_C_like Location: 1408182-1408713 bp Feature: domain Description: INT_RitA_C_like Location: 1408182 -1408713 bp Feature: gene Location: 1408741-1409721 bp Ori: ENZ25437.1 Feature: domain Description: INT_RitB_C_like Location: 1409077-1409653 bp Feature: domain Description: INT_RitB_C_like Location: 1409077-1409653 bp Feature: gene Location: 1409708-1410076 bp Ori: ENZ25438.1 Feature: domain Description: Phage_int_SAM_1 Location: 1409753-1410005 bp Feature: domain Description: Phage_int_SAM_1 Location: 1409753-1410005 bp Feature: gene Location: 1410250-1410477 bp Ori: ENZ25439.1 Feature: domain Description: INT_RitC_C_like Location: 1410253-1410400 bp Feature: domain Description: INT_RitC_C_like Location: 14102 53-1410400 bp Feature: gene Location: 1410893-1411288 bp Ori: ENZ25440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1411187-1411286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1411187-14112 86 bp Feature: gene Location: 1411843-1413798 bp Ori: ENZ25288.1 Feature: domain Description: BglG Location: 1411846-1413169 bp Feature: domain Description: BglG Location: 1411846-1413169 bp Feature: domain Description: PTS_EIIA_2 Location: 1413403-1413784 bp Feature: domain Description: PTS_EIIA_2 Location: 1413403-1413784 bp Feature: gene Location: 1413846-1415027 bp Ori: ENZ25289.1 Feature: domain Description: thiolase Location: 1413861-1415013 bp Feature: domain Description: thiolase Location: 1413861-1415013 bp Feature: gene Location: 1535264-1536223 bp Ori: ENZ24989.1 Feature: domain Description: N6_N4_Mtase Location: 1535342-1536194 bp Feature: domain Description: N6_N4_Mtase Location: 1535342 -1536194 bp Feature: gene Location: 1536220-1536429 bp Feature: gene Location: 1536611-1538491 bp Ori: ENZ24991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1536944-1537661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1536944-1537661 bp Feature: domain Description: HNHc Note: nucleases Location: 1538243-1538381 bp Feature: domain Description: HNHc Note: nucleases Location: 15382 43-1538381 bp Feature: gene Location: 1539223-1541445 bp Ori: ENZ24992.1 Feature: domain Description: VirB4_CagE Location: 1539352-1539790 bp Feature: domain Description: VirB4_CagE Location: 1539352 -1539790 bp Feature: domain Description: VirB4_CagE Location: 1540027-1541419 bp Feature: domain Description: VirB4_CagE Location: 154002 7-1541419 bp Feature: gene Location: 1541396-1541797 bp Ori: ENZ24993.1 Feature: domain Description: PrgI Location: 1541411-1541684 bp Feature: domain Description: PrgI Location: 1541411-1541684 bp Feature: gene Location: 1551084-1551302 bp Ori: ENZ25004.1 Feature: domain Description: Maff2 Location: 1551087-1551294 bp Feature: domain Description: Maff2 Location: 1551087-15512 94 bp Feature: gene Location: 1551369-1552040 bp Feature: gene Location: 1552616-1554448 bp Ori: ENZ25006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552880-1553711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552 880-1553711 bp Feature: domain Description: Intron_maturas2 Location: 1553783-1554098 bp Feature: domain Description: Intron_maturas2 Location: 1553783-1554098 bp Feature: domain Description: HNHc Note: nucleases Location: 1554245-1554419 bp Feature: domain Description: HNHc Note: nucleases Location: 15542 45-1554419 bp Feature: gene Location: 1554524-1554826 bp Feature: gene Location: 1554836-1555381 bp Ori: ENZ25008.1 Feature: domain Description: IME4 Location: 1554845-1555364 bp Feature: domain Description: IME4 Location: 1554845-1555364 bp Feature: gene Location: 1555396-1555863 bp Ori: ENZ25009.1 Feature: domain Description: PrgI Location: 1555411-1555684 bp Feature: domain Description: PrgI Location: 1555411-1555684 bp Feature: gene Location: 1555808-1557985 bp Ori: ENZ25010.1 Feature: domain Description: VirB4_CagE Location: 1555895-1556348 bp Feature: domain Description: VirB4_CagE Location: 1555895-1556348 bp Feature: domain Description: TraC-F-type Location: 1556615-1557974 bp Feature: domain Description: TraC-F-type Location: 1556615-1557974 bp Feature: gene Location: 1558717-1560597 bp Ori: ENZ25011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559050-1559767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559050-1559767 bp Feature: domain Description: HNHc Note: nucleases Location: 1560349-1560487 bp Feature: domain Description: HNHc Note: nucleases Location: 1560349-1560487 bp Feature: gene Location: 1560779-1561015 bp Feature: gene Location: 1560996-1561364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), TTRAP (pfam14203), YitT_membrane (pfam02588), SoxR (TIGR01950)
GIIM (pfam08388), YrpB (COG2070), PRK05654 (acetyl-CoA carboxylase carboxyltransferase subunit beta), PRK05724 (acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated), HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182)
BglG (COG3711), PTS_EIIA_2 (pfam00359), thiolase (PRK06158), N6_N4_Mtase (pfam01555), VirB4_CagE (TIGR00929), PrgI (pfam12666), Maff2 (pfam12750), IME4 (COG4725), TraC-F-type (TIGR02746)

Seq: KB851057.1 Clostridium clostridioforme 90A3 genomic scaffold acBSk-supercont1.3, whole genome shotgun sequence (911010 bp)
Overview 1 RT 1: 149217-155215 bp 2 RT 2: 171037-178203 bp 3 RT 3: 335480-341866 bp 4 RT 4: 375305-381200 bp 5 RT 5: 498095-502950 bp 6 RT 6: 633392-641538 bp Neighborhood of RT #1 [149217, 156528] COG3943 RVT-Retrons Virulence_RhuM KAP_NTPase Neighborhood of RT #2 [171037, 178226] PrgI TraC-F-type RVT-GII HNHc Spr Neighborhood of RT #3 [335480, 341866] DUF4259 DUF3852 RVT-GII HNHc Neighborhood of RT #4 [375305, 381200] pcrA pcrA RVT-GII GIIM group_II_RT_mat Neighborhood of RT #5 [498095, 502973] YwqE SAPR RVT-GII GIIM SAPR CoxS Neighborhood of RT #6 [633392, 641684] Spr RVT-GII HNHc VirB4_CagE TraC-F-type PrgI Feature: gene Location: 149217-149309 bp Feature: gene Location: 149705-150727 bp Ori: ENZ21672.1 Feature: domain Description: COG3943 Location: 149723-150692 bp Feature: domain Description: COG3 943 Location: 149723 -150692 bp Feature: gene Location: 150820-152799 bp Ori: ENZ21673.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151957-152521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151957-152521 bp Feature: gene Location: 153227-153835 bp Ori: ENZ21674.1 Feature: domain Description: Virulence_RhuM Location: 153287-153767 bp Feature: domain Description: Virulence_RhuM Location: 153 287-153 767 bp Feature: gene Location: 154309-156528 bp Ori: ENZ21675.1 Feature: domain Description: KAP_NTPase Location: 154363-155215 bp Feature: domain Description: KAP_NTPase Location: 1543 63 -155215 bp Feature: gene Location: 171037-171426 bp Ori: ENZ21692.1 Feature: domain Description: PrgI Location: 171052-171325 bp Feature: domain Description: PrgI Location: 171052-1713 25 bp Feature: gene Location: 171386-173518 bp Ori: ENZ21693.1 Feature: domain Description: TraC-F-type Location: 172112-173501 bp Feature: domain Description: TraC-F-type Location: 172112-173 501 bp Feature: gene Location: 174250-176130 bp Ori: ENZ21694.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174583-175300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174583 -1753 00 bp Feature: domain Description: HNHc Note: nucleases Location: 175882-176020 bp Feature: domain Description: HNHc Note: nucleases Location: 175882-176020 bp Feature: gene Location: 176264-176530 bp Feature: gene Location: 176511-178226 bp Ori: ENZ21696.1 Feature: domain Description: Spr Location: 177879-178203 bp Feature: domain Description: Spr Location: 177879-178203 bp Feature: gene Location: 335480-336067 bp Ori: ENZ21341.1 Feature: domain Description: DUF4259 Location: 335486-335828 bp Feature: domain Description: DUF4259 Location: 3 3 5486-3 3 5828 bp Feature: gene Location: 336116-336454 bp Ori: ENZ21342.1 Feature: domain Description: DUF3852 Location: 336122-336446 bp Feature: domain Description: DUF3 852 Location: 3 3 6122-3 3 6446 bp Feature: gene Location: 336760-338646 bp Ori: ENZ21343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337075-337804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 7075-3 3 7804 bp Feature: domain Description: HNHc Note: nucleases Location: 338359-338527 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 83 59-3 3 8527 bp Feature: gene Location: 339376-339792 bp Feature: gene Location: 340532-341866 bp Feature: gene Location: 375305-377647 bp Ori: ENZ21384.1 Feature: domain Description: pcrA Location: 375320-377228 bp Feature: domain Description: pcrA Location: 3 753 20-3 77228 bp Feature: domain Description: pcrA Location: 377474-377636 bp Feature: domain Description: pcrA Location: 3 77474-3 7763 6 bp Feature: gene Location: 377856-378170 bp Feature: gene Location: 378743-379903 bp Ori: ENZ21386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378833-379448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7883 3 -3 79448 bp Feature: domain Description: GIIM Note: maturase Location: 379511-379739 bp Feature: domain Description: GIIM Note: maturase Location: 3 79511-3 7973 9 bp Feature: gene Location: 380492-380698 bp Ori: ENZ21387.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 380528-380690 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 80528-3 80690 bp Feature: gene Location: 380880-381200 bp Feature: gene Location: 498095-498856 bp Ori: ENZ21063.1 Feature: domain Description: YwqE Location: 498110-498830 bp Feature: domain Description: YwqE Location: 498110-49883 0 bp Feature: gene Location: 498853-499311 bp Ori: ENZ21064.1 Feature: domain Description: SAPR Location: 498865-499291 bp Feature: domain Description: SAPR Location: 498865-499291 bp Feature: gene Location: 499947-501107 bp Ori: ENZ21065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500037-500652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50003 7-500652 bp Feature: domain Description: GIIM Note: maturase Location: 500715-500943 bp Feature: domain Description: GIIM Note: maturase Location: 500715-500943 bp Feature: gene Location: 501693-502148 bp Ori: ENZ21066.1 Feature: domain Description: SAPR Location: 501711-502056 bp Feature: domain Description: SAPR Location: 501711-502056 bp Feature: gene Location: 502488-502973 bp Ori: ENZ21067.1 Feature: domain Description: CoxS Location: 502503-502950 bp Feature: domain Description: CoxS Location: 502503 -502950 bp Feature: gene Location: 633392-635305 bp Ori: ENZ20784.1 Feature: domain Description: Spr Location: 634940-635282 bp Feature: domain Description: Spr Location: 63 4940-63 5282 bp Feature: gene Location: 635335-636153 bp Feature: gene Location: 636537-638417 bp Ori: ENZ20786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636870-637587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 6870-63 7587 bp Feature: domain Description: HNHc Note: nucleases Location: 638169-638307 bp Feature: domain Description: HNHc Note: nucleases Location: 63 8169-63 83 07 bp Feature: gene Location: 639149-641302 bp Ori: ENZ20787.1 Feature: domain Description: VirB4_CagE Location: 639233-639641 bp Feature: domain Description: VirB4_CagE Location: 63 923 3 -63 9641 bp Feature: domain Description: TraC-F-type Location: 639896-641291 bp Feature: domain Description: TraC-F-type Location: 63 9896-641291 bp Feature: gene Location: 641250-641684 bp Ori: ENZ20788.1 Feature: domain Description: PrgI Location: 641265-641538 bp Feature: domain Description: PrgI Location: 641265-64153 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, Virulence_RhuM (pfam13310), KAP_NTPase (pfam07693), PrgI (pfam12666), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), Spr (COG0791), DUF4259 (pfam14078)
DUF3852 (pfam12963), pcrA (TIGR01073), GIIM (pfam08388), group_II_RT_mat (TIGR04416), YwqE (COG4464), SAPR (COG3947), CoxS (COG2080), VirB4_CagE (TIGR00929)

Seq: KB851058.1 Clostridium clostridioforme 90A3 genomic scaffold acBSk-supercont1.4, whole genome shotgun sequence (835210 bp)
Overview 1 RT 1: 129227-135065 bp 2 RT 2: 457858-463924 bp Neighborhood of RT #1 [129227, 135199] DUF3851 RVT-GII HNHc VirB4_CagE TraC-F-type PrgI Neighborhood of RT #2 [457858, 463924] DUF3852 RVT-GII HNHc RVT-GII Feature: gene Location: 129227-129595 bp Ori: ENZ20474.1 Feature: domain Description: DUF3851 Location: 129230-129593 bp Feature: domain Description: DUF3851 Location: 129230-129593 bp Feature: gene Location: 129598-129813 bp Feature: gene Location: 129995-131875 bp Ori: ENZ20476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130328-131045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130328-13104 5 bp Feature: domain Description: HNHc Note: nucleases Location: 131627-131765 bp Feature: domain Description: HNHc Note: nucleases Location: 131627-131765 bp Feature: gene Location: 132607-134766 bp Ori: ENZ20477.1 Feature: domain Description: VirB4_CagE Location: 132679-133129 bp Feature: domain Description: VirB4 _CagE Location: 132679-133129 bp Feature: domain Description: TraC-F-type Location: 133408-134755 bp Feature: domain Description: TraC-F-type Location: 1334 08-134 755 bp Feature: gene Location: 134777-135199 bp Ori: ENZ20478.1 Feature: domain Description: PrgI Location: 134792-135065 bp Feature: domain Description: PrgI Location: 134 792-135065 bp Feature: gene Location: 457858-458193 bp Ori: ENZ19688.1 Feature: domain Description: DUF3852 Location: 457864-458185 bp Feature: domain Description: DUF3852 Location: 4 57864 -4 58185 bp Feature: gene Location: 458294-458758 bp Feature: gene Location: 458987-459925 bp Ori: ENZ19690.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458993-459080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 58993-4 59080 bp Feature: domain Description: HNHc Note: nucleases Location: 459638-459806 bp Feature: domain Description: HNHc Note: nucleases Location: 4 59638-4 59806 bp Feature: gene Location: 459916-460872 bp Ori: ENZ19691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460231-460858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 60231-4 60858 bp Feature: gene Location: 461602-463239 bp Feature: gene Location: 463310-463924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3851 (pfam12962), RVT-GII, HNHc (smart00507), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666), DUF3852 (pfam12963)