myRT

myRT report for GCA_000371645.1_Clos_bolt_90B8_V1

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Seq: KB851156.1 Clostridium bolteae 90B8 genomic scaffold acBSf-supercont1.7, whole genome shotgun sequence (525548 bp)
Overview 1 RT 1: 171754-188233 bp Neighborhood of RT #1 [171754, 188233] PerM DUF3837 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII Feature: gene Location: 171754-173001 bp Ori: ENZ34552.1 Feature: domain Description: PerM Location: 171871-172912 bp Feature: domain Description: PerM Location: 1 71 871 -1 7291 2 bp Feature: gene Location: 173205-173513 bp Ori: ENZ34553.1 Feature: domain Description: DUF3837 Location: 173211-173508 bp Feature: domain Description: DUF3837 Location: 1 7321 1 -1 73508 bp Feature: gene Location: 173651-174379 bp Ori: ENZ34554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173693-173930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 73693-1 73930 bp Feature: domain Description: GIIM Note: maturase Location: 173984-174212 bp Feature: domain Description: GIIM Note: maturase Location: 1 73984-1 7421 2 bp Feature: gene Location: 174454-175464 bp Ori: ENZ34555.1 Feature: domain Description: Phage_int_SAM_1 Location: 174499-174751 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 74499-1 74751 bp Feature: domain Description: INT_RitC_C_like Location: 174832-175384 bp Feature: domain Description: INT_RitC_C_like Location: 1 74832-1 75384 bp Feature: gene Location: 175451-176431 bp Ori: ENZ34556.1 Feature: domain Description: INT_RitB_C_like Location: 175787-176366 bp Feature: domain Description: INT_RitB_C_like Location: 1 75787-1 76366 bp Feature: gene Location: 176424-177659 bp Ori: ENZ34557.1 Feature: domain Description: Phage_int_SAM_1 Location: 176796-177012 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 76796-1 7701 2 bp Feature: domain Description: INT_RitA_C_like Location: 177093-177624 bp Feature: domain Description: INT_RitA_C_like Location: 1 77093-1 77624 bp Feature: gene Location: 177814-178515 bp Ori: ENZ34558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178129-178510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 781 29-1 7851 0 bp Feature: gene Location: 179031-179357 bp Feature: gene Location: 180200-188233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188)

Seq: KB851143.1 Clostridium bolteae 90B8 genomic scaffold acBSf-supercont1.14, whole genome shotgun sequence (98197 bp)
Overview 1 RT 1: 1-3242 bp 2 RT 2: 93421-97573 bp Neighborhood of RT #1 [1, 3256] RVT-GII Intron_maturas2 DUF3801 Neighborhood of RT #2 [93421, 97608] HTH_3 Zn_ribbon_2 VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1693 bp Ori: ENZ31266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 65-1084 bp Feature: domain Description: Intron_maturas2 Location: 1156-1459 bp Feature: domain Description: Intron_maturas2 Location: 1156-1459 bp Feature: gene Location: 2253-2759 bp Feature: gene Location: 2756-3256 bp Ori: ENZ31268.1 Feature: domain Description: DUF3801 Location: 2846-3242 bp Feature: domain Description: DUF3801 Location: 2 846-32 42 bp Feature: gene Location: 93421-93864 bp Ori: ENZ31362.1 Feature: domain Description: HTH_3 Location: 93442-93598 bp Feature: domain Description: HTH_3 Location: 93442 -93598 bp Feature: domain Description: Zn_ribbon_2 Location: 93628-93862 bp Feature: domain Description: Zn_ribbon_2 Location: 9362 8-93862 bp Feature: gene Location: 94342-95616 bp Ori: ENZ31363.1 Feature: domain Description: VirD4 Location: 94432-95515 bp Feature: domain Description: VirD4 Location: 94432 -95515 bp Feature: gene Location: 95791-97608 bp Ori: ENZ31364.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96055-96874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96055-96874 bp Feature: domain Description: Intron_maturas2 Location: 96946-97249 bp Feature: domain Description: Intron_maturas2 Location: 96946-972 49 bp Feature: domain Description: HNHc Note: nucleases Location: 97429-97573 bp Feature: domain Description: HNHc Note: nucleases Location: 9742 9-97573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF3801 (pfam12687), HTH_3 (pfam01381), Zn_ribbon_2 (pfam12674), VirD4 (COG3505), HNHc (smart00507)

Seq: KB851153.1 Clostridium bolteae 90B8 genomic scaffold acBSf-supercont1.4, whole genome shotgun sequence (681623 bp)
Overview 1 RT 1: 453977-458761 bp Neighborhood of RT #1 [453977, 458772] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Feature: gene Location: 453977-454855 bp Ori: ENZ38342.1 Feature: domain Description: UgpA Location: 453995-454841 bp Feature: domain Description: UgpA Location: 453 995-454841 bp Feature: gene Location: 454870-455703 bp Ori: ENZ38343.1 Feature: domain Description: UgpE Location: 454885-455698 bp Feature: domain Description: UgpE Location: 454885-455698 bp Feature: gene Location: 456123-457130 bp Ori: ENZ38344.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 456288-456843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 456288-456843 bp Feature: gene Location: 457142-457885 bp Ori: ENZ38345.1 Feature: domain Description: NAT_SF Location: 457349-457466 bp Feature: domain Description: NAT_SF Location: 4573 49-457466 bp Feature: domain Description: YoaP Location: 457748-457874 bp Feature: domain Description: YoaP Location: 457748-457874 bp Feature: gene Location: 458188-458772 bp Ori: ENZ38346.1 Feature: domain Description: spoVFB Location: 458191-458761 bp Feature: domain Description: spoVFB Location: 458191-458761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305)

Seq: KB851152.1 Clostridium bolteae 90B8 genomic scaffold acBSf-supercont1.3, whole genome shotgun sequence (707849 bp)
Overview 1 RT 1: 637196-643978 bp Neighborhood of RT #1 [637196, 643992] PRK08270 NrdH RVT-GII RVT-GII GIIM HpcH PBP2_TRAP_Siap Feature: gene Location: 637196-639616 bp Ori: ENZ40292.1 Feature: domain Description: PRK08270 Location: 637202-639182 bp Feature: domain Description: PRK08270 Location: 637202-639182 bp Feature: domain Description: NrdH Location: 639386-639563 bp Feature: domain Description: NrdH Location: 639386-639563 bp Feature: gene Location: 639627-639923 bp Feature: gene Location: 640455-641156 bp Ori: ENZ40294.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640770-641151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 0770-64 1151 bp Feature: gene Location: 641186-641833 bp Ori: ENZ40295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641189-641453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 1189-64 14 53 bp Feature: domain Description: GIIM Note: maturase Location: 641534-641753 bp Feature: domain Description: GIIM Note: maturase Location: 64 1534 -64 1753 bp Feature: gene Location: 642110-642883 bp Ori: ENZ40296.1 Feature: domain Description: HpcH Location: 642116-642866 bp Feature: domain Description: HpcH Location: 64 2116-64 2866 bp Feature: gene Location: 642898-643992 bp Ori: ENZ40297.1 Feature: domain Description: PBP2_TRAP_Siap Location: 643078-643978 bp Feature: domain Description: PBP2_TRAP_Siap Location: 64 3078-64 3978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), RVT-GII, GIIM (pfam08388), HpcH (COG3836), PBP2_TRAP_Siap (cd13672)

Seq: KB851138.1 Clostridium bolteae 90B8 genomic scaffold acBSf-supercont1.1, whole genome shotgun sequence (758494 bp)
Overview 1 RT 1: 110572-117850 bp 2 RT 2: 556020-562834 bp Neighborhood of RT #1 [110572, 117858] DNA_gyraseB gyrB gyrB RVT-GII GIIM PinE Zn_ribbon_recom Recombinase HTH_17 RVT-GII HTH_16 Neighborhood of RT #2 [556020, 563847] TcpE AAA_10 RVT-GII AAA_10 TrbL Feature: gene Location: 110572-110832 bp Ori: ENZ45268.1 Feature: domain Description: DNA_gyraseB Location: 110575-110815 bp Feature: domain Description: DNA_gyraseB Location: 1105 75 -110815 bp Feature: gene Location: 110844-112022 bp Ori: ENZ45269.1 Feature: domain Description: gyrB Location: 111429-111582 bp Feature: domain Description: gyrB Location: 111429-1115 82 bp Feature: domain Description: gyrB Location: 111684-111849 bp Feature: domain Description: gyrB Location: 111684-111849 bp Feature: gene Location: 112119-113048 bp Ori: ENZ45270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112125-112584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112125 -1125 84 bp Feature: domain Description: GIIM Note: maturase Location: 112644-112875 bp Feature: domain Description: GIIM Note: maturase Location: 112644-112875 bp Feature: gene Location: 113534-113854 bp Feature: gene Location: 113990-116029 bp Ori: ENZ45272.1 Feature: domain Description: PinE Location: 114050-114737 bp Feature: domain Description: PinE Location: 11405 0-114737 bp Feature: domain Description: Zn_ribbon_recom Location: 114998-115172 bp Feature: domain Description: Zn_ribbon_recom Location: 114998-115 172 bp Feature: domain Description: Recombinase Location: 115709-115817 bp Feature: domain Description: Recombinase Location: 115 709-115 817 bp Feature: domain Description: HTH_17 Location: 115871-116003 bp Feature: domain Description: HTH_17 Location: 115 871-116003 bp Feature: gene Location: 116043-116363 bp Ori: ENZ45273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116247-116295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116247-116295 bp Feature: gene Location: 117062-117304 bp Feature: gene Location: 117673-117858 bp Ori: ENZ45275.1 Feature: domain Description: HTH_16 Location: 117694-117850 bp Feature: domain Description: HTH_16 Location: 117694-11785 0 bp Feature: gene Location: 556020-556412 bp Ori: ENZ43918.1 Feature: domain Description: TcpE Location: 556038-556335 bp Feature: domain Description: TcpE Location: 5 5 6038-5 5 6335 bp Feature: gene Location: 556396-557949 bp Ori: ENZ43919.1 Feature: domain Description: AAA_10 Location: 557728-557914 bp Feature: domain Description: AAA_10 Location: 5 5 7728-5 5 7914 bp Feature: gene Location: 558646-560472 bp Ori: ENZ43920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558946-559645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 8946-5 5 9645 bp Feature: gene Location: 560690-561532 bp Ori: ENZ43921.1 Feature: domain Description: AAA_10 Location: 560693-561491 bp Feature: domain Description: AAA_10 Location: 5 60693-5 61491 bp Feature: gene Location: 561526-563847 bp Ori: ENZ43922.1 Feature: domain Description: TrbL Location: 562474-562834 bp Feature: domain Description: TrbL Location: 5 62474-5 62834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_gyraseB (pfam00204), gyrB (TIGR01059), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_17 (pfam12728), HTH_16 (pfam12645), TcpE (pfam12648)
AAA_10 (pfam12846), TrbL (pfam04610)