myRT

myRT report for GCA_000371665.1_Clos_bolt_90B7_V1

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Seq: KB851166.1 Clostridium bolteae 90B7 genomic scaffold acsNV-supercont1.16, whole genome shotgun sequence (39576 bp)
Overview 1 RT 1: 28988-37688 bp Neighborhood of RT #1 [28988, 37688] DUF1837 RVT-Retrons Trypsin_2 SIR2 Piwi_piwi-like_ProArk Feature: gene Location: 28988-29374 bp Feature: gene Location: 29834-30646 bp Ori: ENZ61346.1 Feature: domain Description: DUF1837 Location: 29993-30620 bp Feature: domain Description: DUF1 837 Location: 29993-30620 bp Feature: gene Location: 31190-32854 bp Ori: ENZ61347.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31340-31931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 340-31 931 bp Feature: domain Description: Trypsin_2 Location: 32348-32759 bp Feature: domain Description: Trypsin_2 Location: 32348-32759 bp Feature: gene Location: 33061-36201 bp Ori: ENZ61348.1 Feature: domain Description: SIR2 Location: 33130-33628 bp Feature: domain Description: SIR2 Location: 331 30-33628 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 34891-36148 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 34891 -361 48 bp Feature: gene Location: 36318-37688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1837 (pfam08878), RVT-Retrons, Trypsin_2 (pfam13365), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659)

Seq: KB851159.1 Clostridium bolteae 90B7 genomic scaffold acsNV-supercont1.1, whole genome shotgun sequence (1135755 bp)
Overview 1 RT 1: 100820-105196 bp Neighborhood of RT #1 [100820, 105369] PerM DUF3837 RVT-GII GIIM TaR3-like_MBL-fold Feature: gene Location: 100820-102067 bp Ori: ENZ74583.1 Feature: domain Description: PerM Location: 100937-101969 bp Feature: domain Description: PerM Location: 100937-101969 bp Feature: gene Location: 102271-102579 bp Ori: ENZ74584.1 Feature: domain Description: DUF3837 Location: 102277-102574 bp Feature: domain Description: DUF3837 Location: 102 2 77-102 574 bp Feature: gene Location: 102717-103802 bp Ori: ENZ74585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102726-103353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 72 6-103353 bp Feature: domain Description: GIIM Note: maturase Location: 103407-103635 bp Feature: domain Description: GIIM Note: maturase Location: 103407-103635 bp Feature: gene Location: 104027-104353 bp Feature: gene Location: 104536-105369 bp Ori: ENZ74587.1 Feature: domain Description: TaR3-like_MBL-fold Location: 104560-105196 bp Feature: domain Description: TaR3-like_MBL-fold Location: 104560-105196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388), TaR3-like_MBL-fold (cd07715)

Seq: KB851176.1 Clostridium bolteae 90B7 genomic scaffold acsNV-supercont1.8, whole genome shotgun sequence (279990 bp)
Overview 1 RT 1: 12360-17153 bp Neighborhood of RT #1 [12360, 17167] spoVFB NAT_SF YoaP RVT-Retrons UgpE UgpA Feature: gene Location: 12360-12944 bp Ori: ENZ64651.1 Feature: domain Description: spoVFB Location: 12363-12933 bp Feature: domain Description: spoVFB Location: 123 63 -1293 3 bp Feature: gene Location: 13247-13990 bp Ori: ENZ64652.1 Feature: domain Description: NAT_SF Location: 13454-13571 bp Feature: domain Description: NAT_SF Location: 13 454-13 571 bp Feature: domain Description: YoaP Location: 13853-13979 bp Feature: domain Description: YoaP Location: 13 853 -13 979 bp Feature: gene Location: 14002-15009 bp Ori: ENZ64653.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14167-14722 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14167-14722 bp Feature: gene Location: 15441-16274 bp Ori: ENZ64654.1 Feature: domain Description: UgpE Location: 15456-16269 bp Feature: domain Description: UgpE Location: 15456-16269 bp Feature: gene Location: 16289-17167 bp Ori: ENZ64655.1 Feature: domain Description: UgpA Location: 16307-17153 bp Feature: domain Description: UgpA Location: 163 07-17153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395), UgpA (COG1175)

Seq: KB851177.1 Clostridium bolteae 90B7 genomic scaffold acsNV-supercont1.9, whole genome shotgun sequence (229202 bp)
Overview 1 RT 1: 55154-61863 bp 2 RT 2: 147682-152928 bp 3 RT 3: 179818-185745 bp 4 RT 4: 196639-203366 bp Neighborhood of RT #1 [55154, 61916] PBP2_TRAP_Siap HpcH RVT-GII GIIM PRK08270 NrdH Neighborhood of RT #2 [147682, 152957] DDE_Tnp_1 DDE_5 RVT-GII GIIM RVT-GII MglA AraH Neighborhood of RT #3 [179818, 185765] dnaG DUF3991 Toprim_2 MobL SLR SLR RVT-GII Intron_maturas2 HNHc MobL Neighborhood of RT #4 [196639, 203366] DUF3852 RVT-GII HNHc Feature: gene Location: 55154-56248 bp Ori: ENZ63625.1 Feature: domain Description: PBP2_TRAP_Siap Location: 55334-56234 bp Feature: domain Description: PBP2_TRAP_Siap Location: 55334 -56234 bp Feature: gene Location: 56263-57036 bp Ori: ENZ63626.1 Feature: domain Description: HpcH Location: 56269-57019 bp Feature: domain Description: HpcH Location: 56269-57019 bp Feature: gene Location: 57266-58657 bp Ori: ENZ63627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57581-58208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57581-58208 bp Feature: domain Description: GIIM Note: maturase Location: 58262-58490 bp Feature: domain Description: GIIM Note: maturase Location: 58262-584 90 bp Feature: gene Location: 59189-59485 bp Feature: gene Location: 59496-61916 bp Ori: ENZ63629.1 Feature: domain Description: PRK08270 Location: 59502-61482 bp Feature: domain Description: PRK08270 Location: 59502-614 82 bp Feature: domain Description: NrdH Location: 61686-61863 bp Feature: domain Description: NrdH Location: 61686-61863 bp Feature: gene Location: 147682-148350 bp Ori: ENZ63714.1 Feature: domain Description: DDE_Tnp_1 Location: 147724-148192 bp Feature: domain Description: DDE_Tnp_1 Location: 14 7724 -14 8192 bp Feature: gene Location: 148338-148970 bp Ori: ENZ63715.1 Feature: domain Description: DDE_5 Location: 148494-148857 bp Feature: domain Description: DDE_5 Location: 14 84 94 -14 8857 bp Feature: gene Location: 149452-150000 bp Ori: ENZ63716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149479-149632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 94 79-14 9632 bp Feature: domain Description: GIIM Note: maturase Location: 149692-149917 bp Feature: domain Description: GIIM Note: maturase Location: 14 9692-14 9917 bp Feature: gene Location: 149997-150494 bp Ori: ENZ63717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150363-150438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150363-1504 38 bp Feature: gene Location: 151262-152023 bp Ori: ENZ63718.1 Feature: domain Description: MglA Location: 151274-152003 bp Feature: domain Description: MglA Location: 151274 -152003 bp Feature: gene Location: 152004-152957 bp Ori: ENZ63719.1 Feature: domain Description: AraH Location: 152019-152928 bp Feature: domain Description: AraH Location: 152019-152928 bp Feature: gene Location: 179818-181281 bp Ori: ENZ63752.1 Feature: domain Description: dnaG Location: 179953-180070 bp Feature: domain Description: dnaG Location: 179953-180070 bp Feature: domain Description: DUF3991 Location: 180187-180403 bp Feature: domain Description: DUF3991 Location: 180187-1804 03 bp Feature: domain Description: Toprim_2 Location: 180427-180700 bp Feature: domain Description: Toprim_2 Location: 1804 27-180700 bp Feature: gene Location: 181294-182610 bp Ori: ENZ63753.1 Feature: domain Description: MobL Location: 181384-181792 bp Feature: domain Description: MobL Location: 181384 -181792 bp Feature: domain Description: SLR Location: 181990-182158 bp Feature: domain Description: SLR Location: 181990-182158 bp Feature: domain Description: SLR Location: 182203-182422 bp Feature: domain Description: SLR Location: 182203-1824 22 bp Feature: gene Location: 182726-184552 bp Ori: ENZ63754.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182993-183827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182993-183827 bp Feature: domain Description: Intron_maturas2 Location: 183908-184205 bp Feature: domain Description: Intron_maturas2 Location: 183908-184 205 bp Feature: domain Description: HNHc Note: nucleases Location: 184379-184523 bp Feature: domain Description: HNHc Note: nucleases Location: 184 379-184 523 bp Feature: gene Location: 184503-184715 bp Feature: gene Location: 185139-185765 bp Ori: ENZ63756.1 Feature: domain Description: MobL Location: 185142-185745 bp Feature: domain Description: MobL Location: 18514 2-18574 5 bp Feature: gene Location: 196639-197034 bp Feature: gene Location: 197627-197962 bp Ori: ENZ63773.1 Feature: domain Description: DUF3852 Location: 197642-197954 bp Feature: domain Description: DUF3852 Location: 19764 2-197954 bp Feature: gene Location: 198249-200222 bp Ori: ENZ63774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198567-199302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198567-199302 bp Feature: domain Description: HNHc Note: nucleases Location: 199911-200049 bp Feature: domain Description: HNHc Note: nucleases Location: 199911-20004 9 bp Feature: gene Location: 200971-202680 bp Feature: gene Location: 202767-203366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388), PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546), MglA (COG1129), AraH (COG1172)
dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), MobL (pfam18555), SLR (sd00010), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3852 (pfam12963)

Seq: KB851174.1 Clostridium bolteae 90B7 genomic scaffold acsNV-supercont1.6, whole genome shotgun sequence (468832 bp)
Overview 1 RT 1: 293606-300147 bp 2 RT 2: 346307-358210 bp 3 RT 3: 374203-379846 bp Neighborhood of RT #1 [293606, 300266] Maff2 RVT-GII Intron_maturas2 HNHc PrgI VirB4_CagE Neighborhood of RT #2 [346307, 358248] DUF3851 TraC-F-type RVT-GII HNHc PrgI IME4 RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #3 [374203, 379860] VirD4 RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 293606-293821 bp Ori: ENZ66559.1 Feature: domain Description: Maff2 Location: 293609-293816 bp Feature: domain Description: Maff2 Location: 293609-293816 bp Feature: gene Location: 293841-294512 bp Feature: gene Location: 295088-296920 bp Ori: ENZ66561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295352-296183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295 35 2-296183 bp Feature: domain Description: Intron_maturas2 Location: 296255-296570 bp Feature: domain Description: Intron_maturas2 Location: 29625 5 -2965 70 bp Feature: domain Description: HNHc Note: nucleases Location: 296717-296891 bp Feature: domain Description: HNHc Note: nucleases Location: 296717-296891 bp Feature: gene Location: 297476-297877 bp Ori: ENZ66562.1 Feature: domain Description: PrgI Location: 297491-297764 bp Feature: domain Description: PrgI Location: 297491-297764 bp Feature: gene Location: 297828-300266 bp Ori: ENZ66563.1 Feature: domain Description: VirB4_CagE Location: 298632-300147 bp Feature: domain Description: VirB4_CagE Location: 298632-300147 bp Feature: gene Location: 346307-346681 bp Ori: ENZ66602.1 Feature: domain Description: DUF3851 Location: 346310-346679 bp Feature: domain Description: DUF385 1 Location: 346310-346679 bp Feature: gene Location: 346684-348051 bp Ori: ENZ66603.1 Feature: domain Description: TraC-F-type Location: 346708-347851 bp Feature: domain Description: TraC-F-type Location: 346708-34785 1 bp Feature: gene Location: 348217-350190 bp Ori: ENZ66604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348553-349291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3485 5 3-349291 bp Feature: domain Description: HNHc Note: nucleases Location: 349846-349984 bp Feature: domain Description: HNHc Note: nucleases Location: 349846-349984 bp Feature: gene Location: 350913-351887 bp Feature: gene Location: 351844-352299 bp Ori: ENZ66606.1 Feature: domain Description: PrgI Location: 351859-352132 bp Feature: domain Description: PrgI Location: 35 185 9-35 2132 bp Feature: gene Location: 352314-352859 bp Ori: ENZ66607.1 Feature: domain Description: IME4 Location: 352323-352842 bp Feature: domain Description: IME4 Location: 35 2323-35 2842 bp Feature: gene Location: 352874-353089 bp Feature: gene Location: 353252-355084 bp Ori: ENZ66609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353516-354347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 35 16-35 4347 bp Feature: domain Description: Intron_maturas2 Location: 354419-354734 bp Feature: domain Description: Intron_maturas2 Location: 35 4419-35 4734 bp Feature: domain Description: HNHc Note: nucleases Location: 354881-355055 bp Feature: domain Description: HNHc Note: nucleases Location: 35 4881-35 5 05 5 bp Feature: gene Location: 355660-356331 bp Feature: gene Location: 356578-358248 bp Ori: ENZ66611.1 Feature: domain Description: SR_TndX_transposase Location: 356647-357058 bp Feature: domain Description: SR_TndX_transposase Location: 35 6647-35 705 8 bp Feature: domain Description: Recombinase Location: 357160-357544 bp Feature: domain Description: Recombinase Location: 35 7160-35 75 44 bp Feature: domain Description: Zn_ribbon_recom Location: 357577-357754 bp Feature: domain Description: Zn_ribbon_recom Location: 35 75 77-35 775 4 bp Feature: domain Description: DUF4368 Location: 358036-358210 bp Feature: domain Description: DUF4368 Location: 35 8036-35 8210 bp Feature: gene Location: 374203-374508 bp Feature: gene Location: 375031-376305 bp Ori: ENZ66633.1 Feature: domain Description: VirD4 Location: 375121-376204 bp Feature: domain Description: VirD4 Location: 375 121-376204 bp Feature: gene Location: 376480-378297 bp Ori: ENZ66634.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376744-377563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376744-3775 63 bp Feature: domain Description: Intron_maturas2 Location: 377635-377938 bp Feature: domain Description: Intron_maturas2 Location: 377635 -377938 bp Feature: domain Description: HNHc Note: nucleases Location: 378118-378262 bp Feature: domain Description: HNHc Note: nucleases Location: 378118-378262 bp Feature: gene Location: 378857-379363 bp Feature: gene Location: 379360-379860 bp Ori: ENZ66636.1 Feature: domain Description: DUF3801 Location: 379429-379846 bp Feature: domain Description: DUF3801 Location: 379429-379846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), VirB4_CagE (TIGR00929), DUF3851 (pfam12962), TraC-F-type (TIGR02746), IME4 (COG4725), SR_TndX_transposase (cd03770)
Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), VirD4 (COG3505), DUF3801 (pfam12687)