myRT

myRT report for GCA_000371705.1_Clos_bolt_90A9_V1

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Seq: KB851182.1 Clostridium bolteae 90A9 genomic scaffold acBQZ-supercont-complete, whole genome shotgun sequence (6377378 bp)
Overview 1 RT 1: 2504965-2509690 bp 2 RT 2: 3612617-3624119 bp 3 RT 3: 4454098-4459889 bp 4 RT 4: 6219063-6224180 bp Neighborhood of RT #1 [2504965, 2509704] spoVFB NAT_SF YoaP RVT-Retrons UgpE UgpA Neighborhood of RT #2 [3612617, 3624133] DUF3848 DUF3849 COG4646 KOG1000 RVT-GII Intron_maturas2 HNHc YtxK COG4646 TTRAP Neighborhood of RT #3 [4454098, 4460068] DUF3851 RVT-GII VirB4_CagE TraC-F-type PrgI Neighborhood of RT #4 [6219063, 6224338] AraH MglA RVT-GII RVT-GII GIIM DDE_5 DDE_Tnp_1 Feature: gene Location: 2504965-2505549 bp Ori: ENZ50733.1 Feature: domain Description: spoVFB Location: 2504968-2505538 bp Feature: domain Description: spoVFB Location: 2504968-2505538 bp Feature: gene Location: 2505796-2506539 bp Ori: ENZ50734.1 Feature: domain Description: NAT_SF Location: 2506003-2506120 bp Feature: domain Description: NAT_SF Location: 2506003-25061 20 bp Feature: domain Description: YoaP Location: 2506402-2506528 bp Feature: domain Description: YoaP Location: 2506402-2506528 bp Feature: gene Location: 2506551-2507558 bp Ori: ENZ50735.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2506716-2507271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 250671 6-2507271 bp Feature: gene Location: 2507978-2508811 bp Ori: ENZ50736.1 Feature: domain Description: UgpE Location: 2507993-2508806 bp Feature: domain Description: UgpE Location: 2507993-2508806 bp Feature: gene Location: 2508826-2509704 bp Ori: ENZ50737.1 Feature: domain Description: UgpA Location: 2508844-2509690 bp Feature: domain Description: UgpA Location: 2508844-2509690 bp Feature: gene Location: 3612617-3613693 bp Ori: ENZ48711.1 Feature: domain Description: DUF3848 Location: 3612635-3612908 bp Feature: domain Description: DUF3848 Location: 361 2635-361 2908 bp Feature: domain Description: DUF3849 Location: 3612938-3613316 bp Feature: domain Description: DUF3849 Location: 361 2938-361 331 6 bp Feature: gene Location: 3613695-3615665 bp Ori: ENZ48712.1 Feature: domain Description: COG4646 Location: 3613806-3614223 bp Feature: domain Description: COG4646 Location: 361 3806-361 4223 bp Feature: domain Description: KOG1000 Location: 3614658-3614862 bp Feature: domain Description: KOG1 000 Location: 361 4658-361 4862 bp Feature: gene Location: 3615662-3617476 bp Ori: ENZ48713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3615929-3616745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 5929-361 6745 bp Feature: domain Description: Intron_maturas2 Location: 3616814-3617144 bp Feature: domain Description: Intron_maturas2 Location: 361 681 4-361 71 44 bp Feature: domain Description: HNHc Note: nucleases Location: 3617294-3617441 bp Feature: domain Description: HNHc Note: nucleases Location: 361 7294-361 7441 bp Feature: gene Location: 3618052-3623841 bp Ori: ENZ48714.1 Feature: domain Description: YtxK Location: 3621193-3621610 bp Feature: domain Description: YtxK Location: 3621 1 93-3621 61 0 bp Feature: domain Description: COG4646 Location: 3621667-3623827 bp Feature: domain Description: COG4646 Location: 3621 667-3623827 bp Feature: gene Location: 3623918-3624133 bp Ori: ENZ48715.1 Feature: domain Description: TTRAP Location: 3623930-3624119 bp Feature: domain Description: TTRAP Location: 3623930-36241 1 9 bp Feature: gene Location: 4454098-4454466 bp Ori: ENZ47879.1 Feature: domain Description: DUF3851 Location: 4454119-4454464 bp Feature: domain Description: DUF3851 Location: 44541 1 9-4454464 bp Feature: gene Location: 4454469-4454684 bp Feature: gene Location: 4455224-4456747 bp Ori: ENZ47881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4455557-4456274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4455557-4456274 bp Feature: gene Location: 4457479-4459656 bp Ori: ENZ47882.1 Feature: domain Description: VirB4_CagE Location: 4457566-4458019 bp Feature: domain Description: VirB4_CagE Location: 4457566-445801 9 bp Feature: domain Description: TraC-F-type Location: 4458286-4459645 bp Feature: domain Description: TraC-F-type Location: 4458286-4459645 bp Feature: gene Location: 4459601-4460068 bp Ori: ENZ47883.1 Feature: domain Description: PrgI Location: 4459616-4459889 bp Feature: domain Description: PrgI Location: 445961 6-4459889 bp Feature: gene Location: 6219063-6220016 bp Ori: ENZ47107.1 Feature: domain Description: AraH Location: 6219078-6219987 bp Feature: domain Description: AraH Location: 621 9078-621 9987 bp Feature: gene Location: 6219997-6220758 bp Ori: ENZ47108.1 Feature: domain Description: MglA Location: 6220009-6220738 bp Feature: domain Description: MglA Location: 6220009-6220738 bp Feature: gene Location: 6221526-6222023 bp Ori: ENZ47109.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6221892-6221967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6221 892-6221 967 bp Feature: gene Location: 6222020-6222568 bp Ori: ENZ47110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6222047-6222200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6222047-6222200 bp Feature: domain Description: GIIM Note: maturase Location: 6222260-6222485 bp Feature: domain Description: GIIM Note: maturase Location: 6222260-6222485 bp Feature: gene Location: 6223050-6223682 bp Ori: ENZ47111.1 Feature: domain Description: DDE_5 Location: 6223206-6223572 bp Feature: domain Description: DDE_5 Location: 6223206-6223572 bp Feature: gene Location: 6223670-6224338 bp Ori: ENZ47112.1 Feature: domain Description: DDE_Tnp_1 Location: 6223712-6224180 bp Feature: domain Description: DDE_Tnp_1 Location: 622371 2-62241 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395), UgpA (COG1175), DUF3848 (pfam12959), DUF3849 (pfam12960), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )
RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), TTRAP (pfam14203), DUF3851 (pfam12962), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666), AraH (COG1172)
MglA (COG1129), GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_1 (pfam01609)