myRT

myRT report for GCA_000371725.1_Clos_bolt_90A5_V1

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Seq: KB851189.1 Clostridium bolteae 90A5 genomic scaffold acBRZ-supercont1.4, whole genome shotgun sequence (605942 bp)
Overview 1 RT 1: 254555-263945 bp Neighborhood of RT #1 [254555, 264796] SIR2 Piwi_piwi-like_ProArk RVT-Retrons Trypsin_2 DUF1837 BRR2 Feature: gene Location: 254555-255925 bp Feature: gene Location: 256042-259182 bp Ori: ENZ48338.1 Feature: domain Description: SIR2 Location: 256111-256609 bp Feature: domain Description: SIR2 Location: 2561 1 1 -256609 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 257872-259129 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 257872-2591 29 bp Feature: gene Location: 259389-261053 bp Ori: ENZ48339.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 259539-260130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 259539-2601 30 bp Feature: domain Description: Trypsin_2 Location: 260547-260958 bp Feature: domain Description: Trypsin_2 Location: 260547-260958 bp Feature: gene Location: 261597-262571 bp Ori: ENZ48340.1 Feature: domain Description: DUF1837 Location: 261756-262509 bp Feature: domain Description: DUF1 837 Location: 261 756-262509 bp Feature: gene Location: 262580-264796 bp Ori: ENZ48341.1 Feature: domain Description: BRR2 Location: 262874-263945 bp Feature: domain Description: BRR2 Location: 262874-263945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), RVT-Retrons, Trypsin_2 (pfam13365), DUF1837 (pfam08878), BRR2 (COG1204)

Seq: KB851183.1 Clostridium bolteae 90A5 genomic scaffold acBRZ-supercont1.1, whole genome shotgun sequence (3058064 bp)
Overview 1 RT 1: 992271-997067 bp 2 RT 2: 2088378-2093426 bp Neighborhood of RT #1 [992271, 997078] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Neighborhood of RT #2 [2088378, 2093524] TaR3-like_MBL-fold RVT-GII GIIM DUF3837 PerM Feature: gene Location: 992271-993149 bp Ori: ENZ56451.1 Feature: domain Description: UgpA Location: 992289-993135 bp Feature: domain Description: UgpA Location: 992 2 89-993135 bp Feature: gene Location: 993164-993997 bp Ori: ENZ56452.1 Feature: domain Description: UgpE Location: 993179-993992 bp Feature: domain Description: UgpE Location: 993179-993992 bp Feature: gene Location: 994429-995436 bp Ori: ENZ56453.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 994594-995149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 994594-995149 bp Feature: gene Location: 995448-996191 bp Ori: ENZ56454.1 Feature: domain Description: NAT_SF Location: 995655-995772 bp Feature: domain Description: NAT_SF Location: 995655-995772 bp Feature: domain Description: YoaP Location: 996054-996180 bp Feature: domain Description: YoaP Location: 996054-996180 bp Feature: gene Location: 996494-997078 bp Ori: ENZ56455.1 Feature: domain Description: spoVFB Location: 996497-997067 bp Feature: domain Description: spoVFB Location: 996497-997067 bp Feature: gene Location: 2088378-2089211 bp Ori: ENZ55902.1 Feature: domain Description: TaR3-like_MBL-fold Location: 2088402-2089038 bp Feature: domain Description: TaR3-like_MBL-fold Location: 2 088402 -2 089038 bp Feature: gene Location: 2089394-2089720 bp Feature: gene Location: 2090236-2091627 bp Ori: ENZ55904.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090551-2091178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 090551-2 091178 bp Feature: domain Description: GIIM Note: maturase Location: 2091232-2091460 bp Feature: domain Description: GIIM Note: maturase Location: 2 0912 32 -2 091460 bp Feature: gene Location: 2091765-2092073 bp Ori: ENZ55905.1 Feature: domain Description: DUF3837 Location: 2091771-2092068 bp Feature: domain Description: DUF3837 Location: 2 091771-2 092 068 bp Feature: gene Location: 2092277-2093524 bp Ori: ENZ55906.1 Feature: domain Description: PerM Location: 2092394-2093426 bp Feature: domain Description: PerM Location: 2 092 394-2 09342 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305), TaR3-like_MBL-fold (cd07715), RVT-GII, GIIM (pfam08388), DUF3837 (pfam12939)
PerM (COG0628)

Seq: KB851187.1 Clostridium bolteae 90A5 genomic scaffold acBRZ-supercont1.2, whole genome shotgun sequence (1978325 bp)
Overview 1 RT 1: 55139-61251 bp 2 RT 2: 147070-152316 bp 3 RT 3: 179206-185133 bp 4 RT 4: 196027-202754 bp 5 RT 5: 1615267-1621140 bp 6 RT 6: 1667084-1677341 bp 7 RT 7: 1725773-1731688 bp 8 RT 8: 1747681-1753324 bp Neighborhood of RT #1 [55139, 61304] PBP2_TRAP_Siap HpcH RVT-GII GIIM PRK08270 NrdH Neighborhood of RT #2 [147070, 152345] DDE_Tnp_1 DDE_5 RVT-GII GIIM RVT-GII MglA AraH Neighborhood of RT #3 [179206, 185153] dnaG DUF3991 Toprim_2 MobL SLR SLR RVT-GII Intron_maturas2 HNHc MobL Neighborhood of RT #4 [196027, 202754] DUF3852 RVT-GII HNHc Neighborhood of RT #5 [1615267, 1621199] RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like HTH_17 HTH_17 Neighborhood of RT #6 [1667084, 1677343] Maff2 RVT-GII Intron_maturas2 HNHc IME4 PrgI RVT-GII HNHc TraC-F-type DUF3851 Neighborhood of RT #7 [1725773, 1731726] PrgI RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Neighborhood of RT #8 [1747681, 1753338] VirD4 RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 55139-56233 bp Ori: ENZ54592.1 Feature: domain Description: PBP2_TRAP_Siap Location: 55319-56219 bp Feature: domain Description: PBP2_TRAP_Siap Location: 553 19-56219 bp Feature: gene Location: 56248-57021 bp Ori: ENZ54593.1 Feature: domain Description: HpcH Location: 56254-57004 bp Feature: domain Description: HpcH Location: 56254-57004 bp Feature: gene Location: 57251-58336 bp Ori: ENZ54594.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57260-57887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57260-57887 bp Feature: domain Description: GIIM Note: maturase Location: 57941-58169 bp Feature: domain Description: GIIM Note: maturase Location: 57941-58169 bp Feature: gene Location: 58577-58873 bp Feature: gene Location: 58884-61304 bp Ori: ENZ54596.1 Feature: domain Description: PRK08270 Location: 58890-60870 bp Feature: domain Description: PRK08270 Location: 58890-60870 bp Feature: domain Description: NrdH Location: 61074-61251 bp Feature: domain Description: NrdH Location: 61074-61251 bp Feature: gene Location: 147070-147738 bp Ori: ENZ54681.1 Feature: domain Description: DDE_Tnp_1 Location: 147112-147580 bp Feature: domain Description: DDE_Tnp_1 Location: 147112-147580 bp Feature: gene Location: 147726-148358 bp Ori: ENZ54682.1 Feature: domain Description: DDE_5 Location: 147882-148245 bp Feature: domain Description: DDE_5 Location: 147882-148245 bp Feature: gene Location: 148840-149388 bp Ori: ENZ54683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148867-149020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148867-149020 bp Feature: domain Description: GIIM Note: maturase Location: 149080-149305 bp Feature: domain Description: GIIM Note: maturase Location: 149080-1493 05 bp Feature: gene Location: 149385-149882 bp Ori: ENZ54684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149751-149826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149751-149826 bp Feature: gene Location: 150650-151411 bp Ori: ENZ54685.1 Feature: domain Description: MglA Location: 150662-151391 bp Feature: domain Description: MglA Location: 150662-1513 91 bp Feature: gene Location: 151392-152345 bp Ori: ENZ54686.1 Feature: domain Description: AraH Location: 151407-152316 bp Feature: domain Description: AraH Location: 151407-1523 16 bp Feature: gene Location: 179206-180669 bp Ori: ENZ54719.1 Feature: domain Description: dnaG Location: 179341-179458 bp Feature: domain Description: dnaG Location: 1793 41-179458 bp Feature: domain Description: DUF3991 Location: 179575-179791 bp Feature: domain Description: DUF3 991 Location: 179575-179791 bp Feature: domain Description: Toprim_2 Location: 179815-180088 bp Feature: domain Description: Toprim_2 Location: 179815-180088 bp Feature: gene Location: 180682-181998 bp Ori: ENZ54720.1 Feature: domain Description: MobL Location: 180772-181180 bp Feature: domain Description: MobL Location: 180772-181180 bp Feature: domain Description: SLR Location: 181378-181546 bp Feature: domain Description: SLR Location: 1813 78-181546 bp Feature: domain Description: SLR Location: 181591-181810 bp Feature: domain Description: SLR Location: 181591-181810 bp Feature: gene Location: 182114-183940 bp Ori: ENZ54721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182381-183215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1823 81-183 215 bp Feature: domain Description: Intron_maturas2 Location: 183296-183593 bp Feature: domain Description: Intron_maturas2 Location: 183 296-183 593 bp Feature: domain Description: HNHc Note: nucleases Location: 183767-183911 bp Feature: domain Description: HNHc Note: nucleases Location: 183 767-183 911 bp Feature: gene Location: 183891-184103 bp Feature: gene Location: 184527-185153 bp Ori: ENZ54723.1 Feature: domain Description: MobL Location: 184530-185133 bp Feature: domain Description: MobL Location: 18453 0-18513 3 bp Feature: gene Location: 196027-196422 bp Feature: gene Location: 197015-197350 bp Ori: ENZ54740.1 Feature: domain Description: DUF3852 Location: 197030-197342 bp Feature: domain Description: DUF3 852 Location: 19703 0-1973 42 bp Feature: gene Location: 197637-199610 bp Ori: ENZ54741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197955-198690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197955-198690 bp Feature: domain Description: HNHc Note: nucleases Location: 199299-199437 bp Feature: domain Description: HNHc Note: nucleases Location: 199299-19943 7 bp Feature: gene Location: 200359-202068 bp Feature: gene Location: 202155-202754 bp Feature: gene Location: 1615267-1615632 bp Feature: gene Location: 1615577-1616665 bp Feature: gene Location: 1616895-1618175 bp Ori: ENZ52812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617105-1617720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617105-1617720 bp Feature: domain Description: GIIM Note: maturase Location: 1617783-1618002 bp Feature: domain Description: GIIM Note: maturase Location: 1617783 -1618002 bp Feature: gene Location: 1619402-1620784 bp Ori: ENZ52813.1 Feature: domain Description: Phage_int_SAM_3 Location: 1619582-1619753 bp Feature: domain Description: Phage_int_SAM_3 Location: 1619582-1619753 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1619954-1620584 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1619954-1620584 bp Feature: gene Location: 1620762-1621199 bp Ori: ENZ52814.1 Feature: domain Description: HTH_17 Location: 1620792-1620933 bp Feature: domain Description: HTH_17 Location: 1620792-162093 3 bp Feature: domain Description: HTH_17 Location: 1620996-1621140 bp Feature: domain Description: HTH_17 Location: 1620996-1621140 bp Feature: gene Location: 1667084-1667299 bp Ori: ENZ52869.1 Feature: domain Description: Maff2 Location: 1667087-1667294 bp Feature: domain Description: Maff2 Location: 1667087-1667294 bp Feature: gene Location: 1667319-1667990 bp Feature: gene Location: 1668566-1670398 bp Ori: ENZ52871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668830-1669661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166883 0-1669661 bp Feature: domain Description: Intron_maturas2 Location: 1669733-1670048 bp Feature: domain Description: Intron_maturas2 Location: 166973 3 -1670048 bp Feature: domain Description: HNHc Note: nucleases Location: 1670195-1670369 bp Feature: domain Description: HNHc Note: nucleases Location: 1670195-16703 69 bp Feature: gene Location: 1670561-1670776 bp Feature: gene Location: 1670791-1671336 bp Ori: ENZ52873.1 Feature: domain Description: IME4 Location: 1670800-1671319 bp Feature: domain Description: IME4 Location: 1670800-16713 19 bp Feature: gene Location: 1671351-1671806 bp Ori: ENZ52874.1 Feature: domain Description: PrgI Location: 1671366-1671639 bp Feature: domain Description: PrgI Location: 16713 66-167163 9 bp Feature: gene Location: 1671763-1672737 bp Feature: gene Location: 1673460-1675433 bp Ori: ENZ52876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673796-1674534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673 796-167453 4 bp Feature: domain Description: HNHc Note: nucleases Location: 1675089-1675227 bp Feature: domain Description: HNHc Note: nucleases Location: 1675089-1675227 bp Feature: gene Location: 1675599-1676966 bp Ori: ENZ52877.1 Feature: domain Description: TraC-F-type Location: 1675623-1676766 bp Feature: domain Description: TraC-F-type Location: 1675623 -1676766 bp Feature: gene Location: 1676969-1677343 bp Ori: ENZ52878.1 Feature: domain Description: DUF3851 Location: 1676972-1677341 bp Feature: domain Description: DUF3 851 Location: 1676972-16773 41 bp Feature: gene Location: 1725773-1726174 bp Ori: ENZ52918.1 Feature: domain Description: PrgI Location: 1725788-1726061 bp Feature: domain Description: PrgI Location: 1725788-1726061 bp Feature: gene Location: 1726352-1726654 bp Feature: gene Location: 1726730-1728562 bp Ori: ENZ52920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726994-1727825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726994-1727825 bp Feature: domain Description: Intron_maturas2 Location: 1727897-1728212 bp Feature: domain Description: Intron_maturas2 Location: 1727897-1728212 bp Feature: domain Description: HNHc Note: nucleases Location: 1728359-1728533 bp Feature: domain Description: HNHc Note: nucleases Location: 17283 59-172853 3 bp Feature: gene Location: 1729138-1729809 bp Feature: gene Location: 1730056-1731726 bp Ori: ENZ52922.1 Feature: domain Description: SR_TndX_transposase Location: 1730125-1730536 bp Feature: domain Description: SR_TndX_transposase Location: 173 0125-173 053 6 bp Feature: domain Description: Recombinase Location: 1730638-1731022 bp Feature: domain Description: Recombinase Location: 173 063 8-173 1022 bp Feature: domain Description: Zn_ribbon_recom Location: 1731055-1731232 bp Feature: domain Description: Zn_ribbon_recom Location: 173 1055-173 123 2 bp Feature: domain Description: DUF4368 Location: 1731514-1731688 bp Feature: domain Description: DUF43 68 Location: 173 1514-173 1688 bp Feature: gene Location: 1747681-1747986 bp Feature: gene Location: 1748509-1749783 bp Ori: ENZ52944.1 Feature: domain Description: VirD4 Location: 1748599-1749682 bp Feature: domain Description: VirD4 Location: 1748599-1749682 bp Feature: gene Location: 1749958-1751775 bp Ori: ENZ52945.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750222-1751041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750222-1751041 bp Feature: domain Description: Intron_maturas2 Location: 1751113-1751416 bp Feature: domain Description: Intron_maturas2 Location: 1751113 -1751416 bp Feature: domain Description: HNHc Note: nucleases Location: 1751596-1751740 bp Feature: domain Description: HNHc Note: nucleases Location: 1751596-1751740 bp Feature: gene Location: 1752335-1752841 bp Feature: gene Location: 1752838-1753338 bp Ori: ENZ52947.1 Feature: domain Description: DUF3801 Location: 1752907-1753324 bp Feature: domain Description: DUF3 801 Location: 1752907-1753 3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388), PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546), MglA (COG1129), AraH (COG1172)
dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), MobL (pfam18555), SLR (sd00010), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3852 (pfam12963), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)
HTH_17 (pfam12728), Maff2 (pfam12750), IME4 (COG4725), PrgI (pfam12666), TraC-F-type (TIGR02746), DUF3851 (pfam12962), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)
VirD4 (COG3505), DUF3801 (pfam12687)