myRT

myRT report for GCA_000372805.1_ASM37280v1

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Seq: KB889840.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_11.12, whole genome shotgun sequence (76931 bp)
Overview 1 RT 1: 3-988 bp Neighborhood of RT #1 [3, 1074] RVT-GII IS285 Feature: gene Location: 3-200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-1 92 bp Feature: gene Location: 519-659 bp Feature: gene Location: 703-1074 bp Feature: domain Description: IS285 Location: 733-988 bp Feature: domain Description: IS285 Location: 733-988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328)

Seq: KB889868.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_135.136, whole genome shotgun sequence (1018 bp)
Overview 1 RT 1: 2-1016 bp Neighborhood of RT #1 [2, 1015] RVT-GII GIIM Feature: gene Location: 2-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-788 bp Feature: domain Description: GIIM Note: maturase Location: 830-1016 bp Feature: domain Description: GIIM Note: maturase Location: 830-1016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: KB889883.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_27.28, whole genome shotgun sequence (38616 bp)
Overview 1 RT 1: 37041-38550 bp Neighborhood of RT #1 [37041, 38615] PKCI_related RVT-GII Feature: gene Location: 37041-37406 bp Feature: domain Description: PKCI_related Location: 37050-37359 bp Feature: domain Description: PKCI_related Location: 3 7050-3 73 59 bp Feature: gene Location: 37453-38034 bp Feature: gene Location: 38259-38615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38355-38550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 55-3 8550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKCI_related (cd01276), RVT-GII

Seq: KB889886.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_3.4, whole genome shotgun sequence (142471 bp)
Overview 1 RT 1: 15117-23936 bp Neighborhood of RT #1 [15117, 24343] HsdM RMtype1_S_Eco933I-TRD2-CR2_like RMtype1_S_Eco933I-TRD2-CR2_like RVT-UG1 PRK04247 CtkA Feature: gene Location: 15117-16601 bp Feature: domain Description: HsdM Location: 15123-16572 bp Feature: domain Description: HsdM Location: 15123-16572 bp Feature: gene Location: 16598-18370 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 17189-17471 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 17189-174 71 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 17774-18350 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 17774 -18350 bp Feature: gene Location: 18381-22373 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 19059-19623 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 19059-19623 bp Feature: gene Location: 22376-23464 bp Feature: domain Description: PRK04247 Location: 22448-22670 bp Feature: domain Description: PRK04 24 7 Location: 224 4 8-22670 bp Feature: gene Location: 23474-24343 bp Feature: domain Description: CtkA Location: 23717-23936 bp Feature: domain Description: CtkA Location: 23717-23936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_Eco933I-TRD2-CR2_like (cd17253), RVT-UG1, PRK04247 (endonuclease NucS), CtkA (cd17792)

Seq: KB889904.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_46.47, whole genome shotgun sequence (22138 bp)
Overview 1 RT 1: 448-7083 bp Neighborhood of RT #1 [448, 7109] YeeA HTH_XRE RVT-Retrons PRK09125 Feature: gene Location: 448-3918 bp Feature: domain Description: YeeA Location: 1300-2008 bp Feature: domain Description: YeeA Location: 1300-2008 bp Feature: gene Location: 4552-4860 bp Feature: domain Description: HTH_XRE Location: 4570-4732 bp Feature: domain Description: HTH_XRE Location: 45 70-4732 bp Feature: gene Location: 4841-5773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5024-5552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 024-5 5 5 2 bp Feature: gene Location: 5934-6140 bp Feature: gene Location: 6189-7109 bp Feature: domain Description: PRK09125 Location: 6288-7083 bp Feature: domain Description: PRK09125 Location: 6288-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeA (COG1002), HTH_XRE (smart00530), RVT-Retrons, PRK09125 (DNA ligase; Provisional)

Seq: KB889940.1 Marinobacter lipolyticus BF04_CF-4 genomic scaffold A3OIDRAFT_scaffold_79.80, whole genome shotgun sequence (8515 bp)
Overview 1 RT 1: 3829-7569 bp Neighborhood of RT #1 [3829, 7631] Abi_C RVT-UG2 DUF2384 DUF1778 Feature: gene Location: 3829-4665 bp Feature: domain Description: Abi_C Location: 4378-4618 bp Feature: domain Description: Abi_C Location: 4378-46 18 bp Feature: gene Location: 4809-5123 bp Feature: gene Location: 5138-6568 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5327-6197 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5327-6 197 bp Feature: gene Location: 6677-7357 bp Feature: domain Description: DUF2384 Location: 7229-7346 bp Feature: domain Description: DUF2384 Location: 7229-7346 bp Feature: gene Location: 7314-7631 bp Feature: domain Description: DUF1778 Location: 7335-7569 bp Feature: domain Description: DUF1778 Location: 7335-756 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abi_C (pfam14355), RVT-UG2, DUF2384 (pfam09722), DUF1778 (pfam08681)