myRT

myRT report for GCA_000372945.1_ASM37294v1

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Seq: KB890029.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold1.1, whole genome shotgun sequence (1456288 bp)
Overview 1 RT 1: 549571-554441 bp Neighborhood of RT #1 [549571, 554443] DUF3701 xerC RVT-GII GIIM HNH IS5 PntB Feature: gene Location: 549571-549786 bp Feature: gene Location: 549932-551449 bp Feature: domain Description: DUF3701 Location: 550133-550403 bp Feature: domain Description: DUF3701 Location: 5501 33-550403 bp Feature: domain Description: xerC Location: 550529-551174 bp Feature: domain Description: xerC Location: 550529-551 1 74 bp Feature: gene Location: 551567-552517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551579-551690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 579-551 690 bp Feature: domain Description: GIIM Note: maturase Location: 551741-551975 bp Feature: domain Description: GIIM Note: maturase Location: 551 741 -551 975 bp Feature: domain Description: HNH Note: nucleases Location: 552233-552359 bp Feature: domain Description: HNH Note: nucleases Location: 552233-552359 bp Feature: gene Location: 552719-553672 bp Feature: domain Description: IS5 Location: 552896-553664 bp Feature: domain Description: IS5 Location: 552896-553664 bp Feature: gene Location: 554201-554443 bp Feature: domain Description: PntB Location: 554204-554441 bp Feature: domain Description: PntB Location: 554204-554441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3701 (pfam12482), xerC (PRK01287), RVT-GII, GIIM (pfam08388), HNH (pfam01844), IS5 (COG3039), PntB (COG1282)

Seq: KB890030.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold10.2, whole genome shotgun sequence (1547068 bp)
Overview 1 RT 1: 1270927-1275890 bp Neighborhood of RT #1 [1270927, 1275961] Beta-lactamase DUF3471 DUF3471 RVT-GII GIIM PAP2_like_5 Feature: gene Location: 1270927-1271268 bp Feature: gene Location: 1271399-1273162 bp Feature: domain Description: Beta-lactamase Location: 1271423-1272410 bp Feature: domain Description: Beta-lactamase Location: 12 7142 3-12 72 410 bp Feature: domain Description: DUF3471 Location: 1272569-1272806 bp Feature: domain Description: DUF3471 Location: 12 72 569-12 72 806 bp Feature: domain Description: DUF3471 Location: 1272839-1273070 bp Feature: domain Description: DUF3471 Location: 12 72 839-12 73070 bp Feature: gene Location: 1273965-1274711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273968-1274340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 73968-12 74340 bp Feature: domain Description: GIIM Note: maturase Location: 1274409-1274628 bp Feature: domain Description: GIIM Note: maturase Location: 12 74409-12 7462 8 bp Feature: gene Location: 1274794-1275084 bp Feature: gene Location: 1275332-1275961 bp Feature: domain Description: PAP2_like_5 Location: 1275560-1275890 bp Feature: domain Description: PAP2 _like_5 Location: 12 75560-12 75890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase (pfam00144), DUF3471 (pfam11954), RVT-GII, GIIM (pfam08388), PAP2_like_5 (cd03394)

Seq: KB890032.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold12.4, whole genome shotgun sequence (603728 bp)
Overview 1 RT 1: 43525-47520 bp 2 RT 2: 203001-204780 bp 3 RT 3: 446123-452276 bp Neighborhood of RT #1 [43525, 47522] RVT-GII maiA fum_ac_acetase Neighborhood of RT #2 [203001, 204780] RVT-GII DEDD_Tnp_IS110 Neighborhood of RT #3 [446123, 452290] RVT-GII GIIM Beta-lactamase degP_htrA_DO Feature: gene Location: 43525-43851 bp Feature: gene Location: 43851-44159 bp Feature: gene Location: 44291-45331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44294-44951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44294-44951 bp Feature: gene Location: 45554-46240 bp Feature: domain Description: maiA Location: 45602-46232 bp Feature: domain Description: maiA Location: 45602-4623 2 bp Feature: gene Location: 46254-47522 bp Feature: domain Description: fum_ac_acetase Location: 46296-47520 bp Feature: domain Description: fum_ac_acetase Location: 46296-47520 bp Feature: gene Location: 203001-203135 bp Feature: gene Location: 203381-203617 bp Feature: gene Location: 203598-204122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203604-204078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 604-204078 bp Feature: gene Location: 204119-204634 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 204191-204494 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 204191-204494 bp Feature: gene Location: 204628-204780 bp Feature: gene Location: 446123-446314 bp Feature: gene Location: 446388-446567 bp Feature: gene Location: 447014-448351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447365-447986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4473 65-447986 bp Feature: domain Description: GIIM Note: maturase Location: 448037-448250 bp Feature: domain Description: GIIM Note: maturase Location: 44803 7-448250 bp Feature: gene Location: 448722-450116 bp Feature: domain Description: Beta-lactamase Location: 449145-450057 bp Feature: domain Description: Beta-lactamase Location: 449145-450057 bp Feature: gene Location: 450683-452290 bp Feature: domain Description: degP_htrA_DO Location: 450914-452276 bp Feature: domain Description: degP_htrA_DO Location: 450914-452276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, maiA (TIGR01262), fum_ac_acetase (TIGR01266), DEDD_Tnp_IS110 (pfam01548), GIIM (pfam08388), Beta-lactamase (pfam00144), degP_htrA_DO (TIGR02037)

Seq: KB890033.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold13.5, whole genome shotgun sequence (442876 bp)
Overview 1 RT 1: 239823-242742 bp Neighborhood of RT #1 [239823, 242789] XerD RVT-GII Rve Feature: gene Location: 239823-240560 bp Feature: domain Description: XerD Location: 240138-240528 bp Feature: domain Description: XerD Location: 24 0138-24 0528 bp Feature: gene Location: 240370-240804 bp Feature: gene Location: 240770-241300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240776-241025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 0776-24 1025 bp Feature: gene Location: 241731-241964 bp Feature: gene Location: 242214-242789 bp Feature: domain Description: Rve Location: 242217-242742 bp Feature: domain Description: Rve Location: 24 2217-24 274 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), RVT-GII, Rve (COG3316)

Seq: KB890035.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold3.7, whole genome shotgun sequence (1079401 bp)
Overview 1 RT 1: 46652-51974 bp 2 RT 2: 390504-400647 bp 3 RT 3: 1074763-1079388 bp Neighborhood of RT #1 [46652, 51985] PHA02517 InsE RVT-GII GIIM PRK08317 TrxB Neighborhood of RT #2 [390504, 400652] PRK05222 PHA02517 RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Rve PA-IIL Neighborhood of RT #3 [1074763, 1079399] HTH_29 HTH_50 DDE_3 Haemagg_act Glug Glug Glug Glug RVT-GII Feature: gene Location: 46652-47470 bp Feature: domain Description: PHA02517 Location: 46718-47339 bp Feature: domain Description: PHA025 17 Location: 46718-47339 bp Feature: gene Location: 47467-47754 bp Feature: domain Description: InsE Location: 47482-47743 bp Feature: domain Description: InsE Location: 47482-47743 bp Feature: gene Location: 48435-49718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48684-49347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48684-49347 bp Feature: domain Description: GIIM Note: maturase Location: 49416-49629 bp Feature: domain Description: GIIM Note: maturase Location: 49416-49629 bp Feature: gene Location: 50133-50972 bp Feature: domain Description: PRK08317 Location: 50211-50553 bp Feature: domain Description: PRK08317 Location: 5 0211-5 05 5 3 bp Feature: gene Location: 51092-51985 bp Feature: domain Description: TrxB Location: 51101-51974 bp Feature: domain Description: TrxB Location: 5 1101-5 1974 bp Feature: gene Location: 390504-392795 bp Feature: domain Description: PRK05222 Location: 390507-392787 bp Feature: domain Description: PRK05 222 Location: 3905 07-392787 bp Feature: gene Location: 393437-393832 bp Feature: domain Description: PHA02517 Location: 393440-393791 bp Feature: domain Description: PHA025 17 Location: 393440-393791 bp Feature: gene Location: 394009-395034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394018-394513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394018-3945 13 bp Feature: domain Description: GIIM Note: maturase Location: 394627-394786 bp Feature: domain Description: GIIM Note: maturase Location: 394627-394786 bp Feature: gene Location: 395347-395511 bp Feature: gene Location: 395504-397723 bp Feature: domain Description: PinE Location: 395552-396143 bp Feature: domain Description: PinE Location: 395 5 5 2-396143 bp Feature: domain Description: Zn_ribbon_recom Location: 396506-396671 bp Feature: domain Description: Zn_ribbon_recom Location: 3965 06-396671 bp Feature: domain Description: HTH_17 Location: 397385-397505 bp Feature: domain Description: HTH_17 Location: 397385 -3975 05 bp Feature: domain Description: HTH_17 Location: 397574-397679 bp Feature: domain Description: HTH_17 Location: 3975 74-397679 bp Feature: gene Location: 397738-398268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398011-398260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398011-398260 bp Feature: gene Location: 398564-399280 bp Feature: domain Description: Rve Location: 398606-399224 bp Feature: domain Description: Rve Location: 398606-399224 bp Feature: gene Location: 399675-400652 bp Feature: domain Description: PA-IIL Location: 400323-400647 bp Feature: domain Description: PA-IIL Location: 400323-400647 bp Feature: gene Location: 1074763-1075857 bp Feature: domain Description: HTH_29 Location: 1074868-1075036 bp Feature: domain Description: HTH_29 Location: 1074868-1075 036 bp Feature: domain Description: HTH_50 Location: 1075084-1075177 bp Feature: domain Description: HTH_5 0 Location: 1075 084-1075 177 bp Feature: domain Description: DDE_3 Location: 1075282-1075717 bp Feature: domain Description: DDE_3 Location: 1075 282-1075 717 bp Feature: gene Location: 1076114-1078558 bp Feature: domain Description: Haemagg_act Location: 1076303-1076588 bp Feature: domain Description: Haemagg_act Location: 1076303-10765 88 bp Feature: domain Description: Glug Location: 1077911-1077974 bp Feature: domain Description: Glug Location: 1077911-1077974 bp Feature: domain Description: Glug Location: 1077986-1078079 bp Feature: domain Description: Glug Location: 1077986-1078079 bp Feature: domain Description: Glug Location: 1078091-1078154 bp Feature: domain Description: Glug Location: 1078091-107815 4 bp Feature: domain Description: Glug Location: 1078190-1078256 bp Feature: domain Description: Glug Location: 1078190-107825 6 bp Feature: gene Location: 1078914-1079399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1079106-1079388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1079106-1079388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388), PRK08317 (hypothetical protein; Provisional), TrxB (COG0492), PRK05222 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728)
Rve (COG3316), PA-IIL (pfam07472), HTH_29 (pfam13551), HTH_50 (pfam18024), DDE_3 (pfam13358), Haemagg_act (smart00912), Glug (pfam07581)

Seq: KB890037.1 Burkholderia sp. WSM4176 genomic scaffold B014DRAFT_scaffold5.9, whole genome shotgun sequence (2837450 bp)
Overview 1 RT 1: 36688-40272 bp 2 RT 2: 258764-263837 bp 3 RT 3: 312710-317261 bp 4 RT 4: 341424-347623 bp Neighborhood of RT #1 [36688, 40274] Transposase_20 RVT-GII GIIM COG3547 COG3547 Neighborhood of RT #2 [258764, 264010] hisZ RVT-GII GMC_oxred_C CE4_NodB nodulat_NodC Neighborhood of RT #3 [312710, 317275] HTH_IclR nifA RVT-GII CBS_pair_GGDEF_PAS_repeat2 PRK11161 Neighborhood of RT #4 [341424, 347643] Carbam_trans_N Carbam_trans_C GIIM RVT-GII CypX Feature: gene Location: 36688-36930 bp Feature: gene Location: 37057-37614 bp Feature: domain Description: Transposase_20 Location: 37321-37474 bp Feature: domain Description: Transposase_20 Location: 37321-37474 bp Feature: gene Location: 37705-38973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37954-38617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37954-386 17 bp Feature: domain Description: GIIM Note: maturase Location: 38686-38896 bp Feature: domain Description: GIIM Note: maturase Location: 386 86 -38896 bp Feature: gene Location: 39521-39874 bp Feature: domain Description: COG3547 Location: 39536-39857 bp Feature: domain Description: COG3547 Location: 39536 -39857 bp Feature: gene Location: 39891-40274 bp Feature: domain Description: COG3547 Location: 39894-40272 bp Feature: domain Description: COG3547 Location: 39894-40272 bp Feature: gene Location: 258764-259771 bp Feature: domain Description: hisZ Location: 258770-259760 bp Feature: domain Description: hisZ Location: 258770-25976 0 bp Feature: gene Location: 259990-260349 bp Feature: gene Location: 260549-261361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260555-260963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 0555-26 096 3 bp Feature: domain Description: GMC_oxred_C Location: 261152-261317 bp Feature: domain Description: GMC_oxred_C Location: 26 1152-26 1317 bp Feature: gene Location: 261978-262637 bp Feature: domain Description: CE4_NodB Location: 262041-262614 bp Feature: domain Description: CE4_NodB Location: 26 2041-26 26 14 bp Feature: gene Location: 262652-264010 bp Feature: domain Description: nodulat_NodC Location: 262661-263837 bp Feature: domain Description: nodulat_NodC Location: 26 26 6 1-26 3837 bp Feature: gene Location: 312710-312925 bp Feature: domain Description: HTH_IclR Location: 312719-312839 bp Feature: domain Description: HTH_IclR Location: 312719-312839 bp Feature: gene Location: 313328-315223 bp Feature: domain Description: nifA Location: 313547-315221 bp Feature: domain Description: nifA Location: 313547-315221 bp Feature: gene Location: 315369-315722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315396-315570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315396 -315570 bp Feature: gene Location: 315942-316325 bp Feature: domain Description: CBS_pair_GGDEF_PAS_repeat2 Location: 315954-316131 bp Feature: domain Description: CBS_pair_GGDEF_PAS_repeat2 Location: 315954-316 131 bp Feature: gene Location: 316622-317275 bp Feature: domain Description: PRK11161 Location: 316652-317261 bp Feature: domain Description: PRK1116 1 Location: 316 6 52-31726 1 bp Feature: gene Location: 341424-343145 bp Feature: domain Description: Carbam_trans_N Location: 341430-342462 bp Feature: domain Description: Carbam_trans_N Location: 341430-34246 2 bp Feature: domain Description: Carbam_trans_C Location: 342588-343032 bp Feature: domain Description: Carbam_trans_C Location: 342588-343032 bp Feature: gene Location: 343728-344045 bp Feature: domain Description: GIIM Note: maturase Location: 343779-343989 bp Feature: domain Description: GIIM Note: maturase Location: 343779-343989 bp Feature: gene Location: 343934-344740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343958-344594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343958-344594 bp Feature: gene Location: 346345-347643 bp Feature: domain Description: CypX Location: 346402-347623 bp Feature: domain Description: CypX Location: 346 402-3476 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), hisZ (PRK12295), GMC_oxred_C (pfam05199), CE4_NodB (cd10943), nodulat_NodC (TIGR04242), HTH_IclR (pfam09339), nifA (TIGR01817)
CBS_pair_GGDEF_PAS_repeat2 (cd04611), PRK11161 (fumarate/nitrate reduction transcriptional regulator Fnr), Carbam_trans_N (pfam02543), Carbam_trans_C (pfam16861), CypX (COG2124)