myRT

myRT report for GCA_000374165.1_ASM37416v1

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Seq: KB893691.1 Frankia sp. BMG5.12 genomic scaffold B207DRAFT_scaffold_117.118, whole genome shotgun sequence (2070 bp)
Overview 1 RT 1: 177-2068 bp Neighborhood of RT #1 [177, 2068] RVT-GII GIIM Feature: gene Location: 177-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399-1 062 bp Feature: domain Description: GIIM Note: maturase Location: 1146-1377 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 46-1 377 bp Feature: gene Location: 1653-1781 bp Feature: gene Location: 1904-2068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: KB893713.1 Frankia sp. BMG5.12 genomic scaffold B207DRAFT_scaffold_16.17, whole genome shotgun sequence (144261 bp)
Overview 1 RT 1: 97153-104312 bp Neighborhood of RT #1 [97153, 104314] LGFP LGFP LGFP Phospholip_A2_3 PBP1_ABC_ligand_binding_like_7 RVT-GII GIIM YhhI BDS1 Feature: gene Location: 97153-98247 bp Feature: domain Description: LGFP Location: 97525-97585 bp Feature: domain Description: LGFP Location: 9752 5-97585 bp Feature: domain Description: LGFP Location: 97591-97741 bp Feature: domain Description: LGFP Location: 97591-97741 bp Feature: domain Description: LGFP Location: 97747-97831 bp Feature: domain Description: LGFP Location: 97747-97831 bp Feature: domain Description: Phospholip_A2_3 Location: 97894-98245 bp Feature: domain Description: Phospholip_A2 _3 Location: 97894-982 45 bp Feature: gene Location: 98411-99496 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_7 Location: 98435-99431 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_7 Location: 98435-99431 bp Feature: gene Location: 100211-101464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100427-101087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10042 7-101087 bp Feature: domain Description: GIIM Note: maturase Location: 101174-101375 bp Feature: domain Description: GIIM Note: maturase Location: 101174-101375 bp Feature: gene Location: 102004-102480 bp Feature: domain Description: YhhI Location: 102190-102358 bp Feature: domain Description: YhhI Location: 102 190-102 358 bp Feature: gene Location: 102479-104314 bp Feature: domain Description: BDS1 Location: 102494-104312 bp Feature: domain Description: BDS1 Location: 102 494-104312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LGFP (pfam08310), Phospholip_A2_3 (pfam09056), PBP1_ABC_ligand_binding_like_7, RVT-GII, GIIM (pfam08388), YhhI (COG5433), BDS1 (COG2015)

Seq: KB893766.1 Frankia sp. BMG5.12 genomic scaffold B207DRAFT_scaffold_64.65, whole genome shotgun sequence (26439 bp)
Overview 1 RT 1: 7734-17751 bp Neighborhood of RT #1 [7734, 17756] INT_RitB_C_like INT_RitC_C_like RVT-GII GIIM HAMP PRK11107 PRK11107 HK_WalK PRK11107 HK_WalK GAF_2 PRK11107 CheY PRK11107 ANTAR PRK09776 SpoIIE Feature: gene Location: 7734-8633 bp Feature: domain Description: INT_RitB_C_like Location: 8010-8490 bp Feature: domain Description: INT_RitB_C_like Location: 8010-8490 bp Feature: gene Location: 8935-9615 bp Feature: domain Description: INT_RitC_C_like Location: 8998-9541 bp Feature: domain Description: INT_RitC_C_like Location: 8998-9541 bp Feature: gene Location: 9737-10309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9749-9878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9749-9878 bp Feature: domain Description: GIIM Note: maturase Location: 9950-10178 bp Feature: domain Description: GIIM Note: maturase Location: 9950-10178 bp Feature: gene Location: 11221-15279 bp Feature: domain Description: HAMP Location: 11269-11392 bp Feature: domain Description: HAMP Location: 11269-113 92 bp Feature: domain Description: PRK11107 Location: 11530-11689 bp Feature: domain Description: PRK11107 Location: 1153 0-11689 bp Feature: domain Description: PRK11107 Location: 11803-11965 bp Feature: domain Description: PRK11107 Location: 11803 -11965 bp Feature: domain Description: HK_WalK Location: 12070-12226 bp Feature: domain Description: HK_WalK Location: 12070-12226 bp Feature: domain Description: PRK11107 Location: 12352-12517 bp Feature: domain Description: PRK11107 Location: 123 52-12517 bp Feature: domain Description: HK_WalK Location: 12625-12823 bp Feature: domain Description: HK_WalK Location: 12625-12823 bp Feature: domain Description: GAF_2 Location: 12856-13267 bp Feature: domain Description: GAF_2 Location: 12856-13 267 bp Feature: domain Description: PRK11107 Location: 13342-14227 bp Feature: domain Description: PRK11107 Location: 13 3 42-14227 bp Feature: domain Description: CheY Location: 14515-14728 bp Feature: domain Description: CheY Location: 14515-14728 bp Feature: domain Description: PRK11107 Location: 14875-15259 bp Feature: domain Description: PRK11107 Location: 14875-15259 bp Feature: gene Location: 15468-17756 bp Feature: domain Description: ANTAR Location: 15561-15708 bp Feature: domain Description: ANTAR Location: 15561-15708 bp Feature: domain Description: PRK09776 Location: 16644-16983 bp Feature: domain Description: PRK09776 Location: 16644-16983 bp Feature: domain Description: SpoIIE Location: 17208-17751 bp Feature: domain Description: SpoIIE Location: 17208-17751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), HAMP (smart00304), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), HK_WalK (NF033092), GAF_2 (pfam13185), CheY (COG0784), ANTAR (smart01012)
PRK09776 (putative diguanylate cyclase; Provisional), SpoIIE (pfam07228)

Seq: KB893789.1 Frankia sp. BMG5.12 genomic scaffold B207DRAFT_scaffold_85.86, whole genome shotgun sequence (11711 bp)
Overview 1 RT 1: 7463-11215 bp Neighborhood of RT #1 [7463, 11301] APH RVT-GII Intron_maturas2 HNHc GIIM Feature: gene Location: 7463-8335 bp Feature: domain Description: APH Location: 7574-8174 bp Feature: domain Description: APH Location: 7574 -8174 bp Feature: gene Location: 8338-8550 bp Feature: gene Location: 8655-10448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8916-9714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8916-9714 bp Feature: domain Description: Intron_maturas2 Location: 9834-10050 bp Feature: domain Description: Intron_maturas2 Location: 9834 -10050 bp Feature: domain Description: HNHc Note: nucleases Location: 10221-10407 bp Feature: domain Description: HNHc Note: nucleases Location: 10221-104 07 bp Feature: gene Location: 11014-11301 bp Feature: domain Description: GIIM Note: maturase Location: 11044-11215 bp Feature: domain Description: GIIM Note: maturase Location: 1104 4 -11215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388)