myRT

myRT report for GCA_000374205.1_ASM37420v1

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Seq: KB893876.1 Bradyrhizobium japonicum USDA 124 genomic scaffold B370DRAFT_scaffold_52.53, whole genome shotgun sequence (23357 bp)
Overview 1 RT 1: 4292-8770 bp Neighborhood of RT #1 [4292, 8770] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4292-4960 bp Feature: domain Description: PHA02518 Location: 4301-4898 bp Feature: domain Description: PHA0251 8 Location: 4301 -4898 bp Feature: gene Location: 5404-6240 bp Feature: domain Description: LomR Location: 5440-6151 bp Feature: domain Description: LomR Location: 5440-61 51 bp Feature: gene Location: 6527-7504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533-7130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533-71 30 bp Feature: domain Description: GIIM Note: maturase Location: 7196-7418 bp Feature: domain Description: GIIM Note: maturase Location: 71 96-741 8 bp Feature: gene Location: 7741-8466 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7759-8194 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7759-81 94 bp Feature: gene Location: 8594-8770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02518 (ParA-like protein; Provisional), LomR (COG3637), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: KB893880.1 Bradyrhizobium japonicum USDA 124 genomic scaffold B370DRAFT_scaffold_56.57, whole genome shotgun sequence (20382 bp)
Overview 1 RT 1: 10699-14055 bp Neighborhood of RT #1 [10699, 14177] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 10699-10833 bp Feature: gene Location: 11452-11592 bp Feature: gene Location: 11598-12896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11853-12510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11853-12 510 bp Feature: domain Description: GIIM Note: maturase Location: 12588-12816 bp Feature: domain Description: GIIM Note: maturase Location: 12 588-12 816 bp Feature: gene Location: 13022-13327 bp Feature: domain Description: HTH_Tnp_1 Location: 13079-13286 bp Feature: domain Description: HTH_Tnp_1 Location: 13079-132 86 bp Feature: gene Location: 13305-14177 bp Feature: domain Description: Tra5 Location: 13347-14055 bp Feature: domain Description: Tra5 Location: 13347-14055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: KB893887.1 Bradyrhizobium japonicum USDA 124 genomic scaffold B370DRAFT_scaffold_62.63, whole genome shotgun sequence (16421 bp)
Overview 1 RT 1: 3-3203 bp Neighborhood of RT #1 [3, 3203] IstB_IS21 RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 3-206 bp Feature: domain Description: IstB_IS21 Location: 6-111 bp Feature: domain Description: IstB_IS21 Location: 6-111 bp Feature: gene Location: 238-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-496 bp Feature: gene Location: 799-1101 bp Feature: gene Location: 1338-1685 bp Feature: gene Location: 1718-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045-2366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045-23 66 bp Feature: gene Location: 2456-2986 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2465-2879 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2465-2879 bp Feature: gene Location: 3057-3203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: KB893891.1 Bradyrhizobium japonicum USDA 124 genomic scaffold B370DRAFT_scaffold_66.67, whole genome shotgun sequence (14426 bp)
Overview 1 RT 1: 7664-10521 bp Neighborhood of RT #1 [7664, 10521] RVT-GII GIIM Feature: gene Location: 7664-7876 bp Feature: gene Location: 8086-8487 bp Feature: gene Location: 8509-9738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8710-9367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8710-9367 bp Feature: domain Description: GIIM Note: maturase Location: 9442-9646 bp Feature: domain Description: GIIM Note: maturase Location: 94 4 2-964 6 bp Feature: gene Location: 9962-10192 bp Feature: gene Location: 10330-10521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)