myRT

myRT report for GCA_000378045.1_ASM37804v1

Download annotations/find similar RTs

Seq: KB899105.1 Marinobacterium rhizophilum DSM 18822 genomic scaffold F451DRAFT_scaffold00017.17, whole genome shotgun sequence (135079 bp)
Overview 1 RT 1: 79964-88203 bp Neighborhood of RT #1 [79964, 88214] TauE RVT-UG1 RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 HsdM Feature: gene Location: 79964-80719 bp Feature: domain Description: TauE Location: 80024-80690 bp Feature: domain Description: TauE Location: 80024-80690 bp Feature: gene Location: 81081-81218 bp Feature: gene Location: 81220-84930 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 81850-82345 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 81 850-82345 bp Feature: gene Location: 84949-86748 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 85297-85849 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 85297-85849 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 86158-86728 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 861 58-86728 bp Feature: gene Location: 86751-88214 bp Feature: domain Description: HsdM Location: 86757-88203 bp Feature: domain Description: HsdM Location: 86757-88203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauE (pfam01925), RVT-UG1, RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278), HsdM (COG0286)

Seq: KB899131.1 Marinobacterium rhizophilum DSM 18822 genomic scaffold F451DRAFT_scaffold00043.43, whole genome shotgun sequence (7289 bp)
Overview 1 RT 1: 766-7162 bp Neighborhood of RT #1 [766, 7287] COG3547 RVT-UG8 RVT-UG3 COG3666 DDE_Tnp_1 Feature: gene Location: 766-1800 bp Feature: domain Description: COG3547 Location: 784-1753 bp Feature: domain Description: COG3547 Location: 784-1753 bp Feature: gene Location: 1883-2059 bp Feature: gene Location: 2416-4458 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2992-3442 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 992 -3442 bp Feature: gene Location: 4455-5747 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4746-5235 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4746-52 35 bp Feature: gene Location: 6064-7287 bp Feature: domain Description: COG3666 Location: 6076-6550 bp Feature: domain Description: COG3666 Location: 6076-6550 bp Feature: domain Description: DDE_Tnp_1 Location: 6763-7162 bp Feature: domain Description: DDE_Tnp_1 Location: 6763-7162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-UG8, RVT-UG3, COG3666 (Transposase ), DDE_Tnp_1 (pfam01609)

Seq: KB899139.1 Marinobacterium rhizophilum DSM 18822 genomic scaffold F451DRAFT_scaffold00051.51, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 509-1757 bp Neighborhood of RT #1 [509, 1843] RVT-GII GIIM Feature: gene Location: 509-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863 -1487 bp Feature: domain Description: GIIM Note: maturase Location: 1529-1757 bp Feature: domain Description: GIIM Note: maturase Location: 1529-1757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)