myRT

myRT report for GCA_000378665.1_ASM37866v1

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Seq: KB900243.1 Salinispora arenicola CNH962 genomic scaffold F582DRAFT_scaffold00012.12, whole genome shotgun sequence (149288 bp)
Overview 1 RT 1: 143240-148972 bp Neighborhood of RT #1 [143240, 149172] YaaT RVT-GII GIIM Feature: gene Location: 143240-144073 bp Feature: domain Description: YaaT Location: 143252-143990 bp Feature: domain Description: YaaT Location: 1 43252-1 43990 bp Feature: gene Location: 144092-146050 bp Feature: gene Location: 147652-149172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147982-148675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47982-1 48675 bp Feature: domain Description: GIIM Note: maturase Location: 148741-148972 bp Feature: domain Description: GIIM Note: maturase Location: 1 48741 -1 48972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YaaT (COG1774), RVT-GII, GIIM (pfam08388)

Seq: KB900253.1 Salinispora arenicola CNH962 genomic scaffold F582DRAFT_scaffold00022.22, whole genome shotgun sequence (75014 bp)
Overview 1 RT 1: 69762-74698 bp Neighborhood of RT #1 [69762, 74898] VKOR_5 DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 69762-70394 bp Feature: domain Description: VKOR_5 Location: 69843-70236 bp Feature: domain Description: VKOR_5 Location: 69843-702 36 bp Feature: gene Location: 72217-72603 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 72220-72598 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 72 2 2 0-72 598 bp Feature: gene Location: 73378-74898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73708-74401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73708-74401 bp Feature: domain Description: GIIM Note: maturase Location: 74467-74698 bp Feature: domain Description: GIIM Note: maturase Location: 74467-74698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VKOR_5 (cd12922), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)

Seq: KB900271.1 Salinispora arenicola CNH962 genomic scaffold F582DRAFT_scaffold00040.40, whole genome shotgun sequence (37327 bp)
Overview 1 RT 1: 18448-25862 bp Neighborhood of RT #1 [18448, 25927] Amino_oxidase Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG7 HTH_MerR-trunc PLDc_2 HTH_17 Feature: gene Location: 18448-19689 bp Feature: domain Description: Amino_oxidase Location: 18490-19666 bp Feature: domain Description: Amino_oxidase Location: 18490-19666 bp Feature: gene Location: 19976-21259 bp Feature: domain Description: Phage_int_SAM_3 Location: 20207-20363 bp Feature: domain Description: Phage_int_SAM_3 Location: 20207-203 63 bp Feature: domain Description: INT_ICEBs1_C_like Location: 20642-21164 bp Feature: domain Description: INT_ICEBs1_C_like Location: 20642-21164 bp Feature: gene Location: 21969-23612 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 22401-22824 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 22401-22824 bp Feature: gene Location: 24793-25551 bp Feature: domain Description: HTH_MerR-trunc Location: 24841-24910 bp Feature: domain Description: HTH_MerR-trunc Location: 24841-24910 bp Feature: domain Description: PLDc_2 Location: 25078-25252 bp Feature: domain Description: PLDc_2 Location: 25078-25252 bp Feature: gene Location: 25688-25927 bp Feature: domain Description: HTH_17 Location: 25727-25862 bp Feature: domain Description: HTH_17 Location: 25727-25862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Amino_oxidase (pfam01593), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG7, HTH_MerR-trunc (cd04762), PLDc_2 (pfam13091), HTH_17 (pfam12728)