myRT

myRT report for GCA_000378805.1_ASM37880v1

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Seq: KB900390.1 Desulfitobacterium hafniense TCP-A genomic scaffold DeshafDRAFT_Scaffold1.1, whole genome shotgun sequence (2527322 bp)
Overview 1 RT 1: 1815129-1821384 bp 2 RT 2: 2398986-2403182 bp 3 RT 3: 2456415-2461205 bp 4 RT 4: 2479411-2486371 bp Neighborhood of RT #1 [1815129, 1821731] FhlA FhlA PRK15426 HDGYP CW_binding_2 CW_binding_2 RVT-GII GIIM GIIM DUF1659 DUF3102 Neighborhood of RT #2 [2398986, 2403187] PHA02517 HTH_Tnp_1 RVT-UG13 EcsC Neighborhood of RT #3 [2456415, 2461228] Cas_Cas7 cas_Cas5h RVT-UG7 VbhA_like FIDO Neighborhood of RT #4 [2479411, 2486451] COG5421 Spo0A_C RVT-AbiA HEPN_AbiA_CTD FbpA NFACT-R_1 Feature: gene Location: 1815129-1817687 bp Feature: domain Description: FhlA Location: 1815453-1815792 bp Feature: domain Description: FhlA Location: 1 81 5453-1 81 5792 bp Feature: domain Description: FhlA Location: 1815825-1816428 bp Feature: domain Description: FhlA Location: 1 81 5825-1 81 6428 bp Feature: domain Description: PRK15426 Location: 1816668-1817007 bp Feature: domain Description: PRK1 5426 Location: 1 81 6668-1 81 7007 bp Feature: domain Description: HDGYP Location: 1817091-1817682 bp Feature: domain Description: HDGYP Location: 1 81 7091 -1 81 7682 bp Feature: gene Location: 1817734-1818231 bp Feature: domain Description: CW_binding_2 Location: 1817800-1817935 bp Feature: domain Description: CW_binding_2 Location: 1 81 7800-1 81 7935 bp Feature: domain Description: CW_binding_2 Location: 1817938-1818196 bp Feature: domain Description: CW_binding_2 Location: 1 81 7938-1 81 81 96 bp Feature: gene Location: 1819115-1820554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819343-1819967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 9343-1 81 9967 bp Feature: domain Description: GIIM Note: maturase Location: 1820042-1820156 bp Feature: domain Description: GIIM Note: maturase Location: 1 820042-1 8201 56 bp Feature: domain Description: GIIM Note: maturase Location: 1820231-1820327 bp Feature: domain Description: GIIM Note: maturase Location: 1 820231 -1 820327 bp Feature: gene Location: 1820668-1820838 bp Feature: domain Description: DUF1659 Location: 1820695-1820764 bp Feature: domain Description: DUF1 659 Location: 1 820695-1 820764 bp Feature: gene Location: 1820985-1821731 bp Feature: domain Description: DUF3102 Location: 1821000-1821384 bp Feature: domain Description: DUF31 02 Location: 1 821 000-1 821 384 bp Feature: gene Location: 2398986-2399840 bp Feature: domain Description: PHA02517 Location: 2399130-2399808 bp Feature: domain Description: PHA0251 7 Location: 23991 30-2399808 bp Feature: gene Location: 2399794-2400132 bp Feature: domain Description: HTH_Tnp_1 Location: 2399800-2399935 bp Feature: domain Description: HTH_Tnp_1 Location: 2399800-2399935 bp Feature: gene Location: 2400197-2401513 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 2400227-2400581 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 2400227-2400581 bp Feature: gene Location: 2401632-2402387 bp Feature: gene Location: 2402567-2403187 bp Feature: domain Description: EcsC Location: 2402723-2403182 bp Feature: domain Description: EcsC Location: 2402723-24031 82 bp Feature: gene Location: 2456415-2457365 bp Feature: domain Description: Cas_Cas7 Location: 2456421-2457243 bp Feature: domain Description: Cas_Cas7 Location: 2456421 -2457243 bp Feature: gene Location: 2457409-2458104 bp Feature: domain Description: cas_Cas5h Location: 2457418-2458015 bp Feature: domain Description: cas_Cas5h Location: 245741 8-245801 5 bp Feature: gene Location: 2458915-2460486 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2459335-2459722 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2459335-2459722 bp Feature: gene Location: 2460740-2460919 bp Feature: domain Description: VbhA_like Location: 2460755-2460854 bp Feature: domain Description: VbhA_like Location: 2460755-2460854 bp Feature: gene Location: 2460932-2461228 bp Feature: domain Description: FIDO Location: 2460956-2461205 bp Feature: domain Description: FIDO Location: 2460956-2461 205 bp Feature: gene Location: 2479411-2481270 bp Feature: domain Description: COG5421 Location: 2479915-2481076 bp Feature: domain Description: COG5421 Location: 247991 5-2481 076 bp Feature: gene Location: 2481497-2481760 bp Feature: domain Description: Spo0A_C Location: 2481521-2481701 bp Feature: domain Description: Spo0A_C Location: 2481 521 -2481 701 bp Feature: gene Location: 2482133-2483938 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 2482406-2482931 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 2482406-2482931 bp Feature: domain Description: HEPN_AbiA_CTD Location: 2483567-2483930 bp Feature: domain Description: HEPN_AbiA_CTD Location: 2483567-2483930 bp Feature: gene Location: 2484202-2484333 bp Feature: gene Location: 2484592-2486451 bp Feature: domain Description: FbpA Location: 2484742-2485909 bp Feature: domain Description: FbpA Location: 2484742-2485909 bp Feature: domain Description: NFACT-R_1 Location: 2486065-2486371 bp Feature: domain Description: NFACT-R_1 Location: 2486065-2486371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FhlA (COG3604), PRK15426 (cellulose biosynthesis regulator YedQ), HDGYP (COG2206), CW_binding_2 (pfam04122), RVT-GII, GIIM (pfam08388), DUF1659 (pfam07872), DUF3102 (pfam11300), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)
RVT-UG13, EcsC (pfam12787), Cas_Cas7 (pfam05107), cas_Cas5h (TIGR02592), RVT-UG7, VbhA_like (cl17006), FIDO (COG2184), COG5421 (Transposase ), Spo0A_C (pfam08769), RVT-AbiA
HEPN_AbiA_CTD (pfam18732), FbpA (pfam05833), NFACT-R_1

Seq: KB900391.1 Desulfitobacterium hafniense TCP-A genomic scaffold DeshafDRAFT_Scaffold2.2, whole genome shotgun sequence (2439910 bp)
Overview 1 RT 1: 725296-727721 bp Neighborhood of RT #1 [725296, 727721] DUF3102 GIIM RVT-UNC Feature: gene Location: 725296-726027 bp Feature: domain Description: DUF3102 Location: 725320-725704 bp Feature: domain Description: DUF3102 Location: 72 532 0-72 5704 bp Feature: gene Location: 726376-726786 bp Feature: domain Description: GIIM Note: maturase Location: 726400-726631 bp Feature: domain Description: GIIM Note: maturase Location: 72 6400-72 6631 bp Feature: gene Location: 726876-727025 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 726879-727002 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 72 6879-72 7002 bp Feature: gene Location: 727180-727434 bp Feature: gene Location: 727455-727721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3102 (pfam11300), GIIM (pfam08388), RVT-GII/RVT-UG7/RVT-CRISPR(RVT-UNC)