myRT

myRT report for GCA_000379025.1_ASM37902v1

Download annotations/find similar RTs

Seq: KB900617.1 Orenia marismortui DSM 5156 genomic scaffold OREMADRAFT_scaffold1.1, whole genome shotgun sequence (1317364 bp)
Overview 1 RT 1: 29484-33330 bp 2 RT 2: 373102-378617 bp 3 RT 3: 454190-466217 bp 4 RT 4: 1095463-1101969 bp 5 RT 5: 1125008-1129859 bp 6 RT 6: 1195720-1200665 bp 7 RT 7: 1234859-1239559 bp 8 RT 8: 1313997-1317276 bp Neighborhood of RT #1 [29484, 33398] PRK15317 group_II_RT_mat RVT-GII AbrB Neighborhood of RT #2 [373102, 378619] flav_short HDGYP RVT-GII GIIM HU spore_IV_A Neighborhood of RT #3 [454190, 466351] CarbopepD_reg_2 COG2374 COG2374 COG2374 CarboxypepD_reg UshA RVT-GII GIIM WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep DUF4372 DDE_Tnp_1 Neighborhood of RT #4 [1095463, 1102007] GlnQ RVT-GII GIIM LptD LptD LptC_YrbK Neighborhood of RT #5 [1125008, 1129861] flgG FlgG RVT-GII GIIM SpoIIID NlpD Neighborhood of RT #6 [1195720, 1200667] spore_yabP RVT-GII GIIM RVT-GII ugpC PurR Neighborhood of RT #7 [1234859, 1239559] RVT-GII GIIM Neighborhood of RT #8 [1313997, 1317362] OmpR HK_WalK RVT-GII GIIM Feature: gene Location: 29484-30479 bp Feature: domain Description: PRK15317 Location: 29505-30468 bp Feature: domain Description: PRK1 531 7 Location: 29505-30468 bp Feature: gene Location: 30808-31197 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30811-31111 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3081 1 -31 1 1 1 bp Feature: gene Location: 31220-31552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31223-31538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 223-31 538 bp Feature: gene Location: 31795-31974 bp Feature: gene Location: 33150-33398 bp Feature: domain Description: AbrB Location: 33153-33330 bp Feature: domain Description: AbrB Location: 331 53-33330 bp Feature: gene Location: 373102-373572 bp Feature: domain Description: flav_short Location: 373147-373531 bp Feature: domain Description: flav_short Location: 3731 47-373531 bp Feature: gene Location: 373813-374448 bp Feature: domain Description: HDGYP Location: 373861-374383 bp Feature: domain Description: HDGYP Location: 373861 -374383 bp Feature: gene Location: 374698-375861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374920-375541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374920-375541 bp Feature: domain Description: GIIM Note: maturase Location: 375586-375775 bp Feature: domain Description: GIIM Note: maturase Location: 375586-375775 bp Feature: gene Location: 376672-376983 bp Feature: domain Description: HU Location: 376687-376966 bp Feature: domain Description: HU Location: 376687-376966 bp Feature: gene Location: 377141-378619 bp Feature: domain Description: spore_IV_A Location: 377144-378617 bp Feature: domain Description: spore_IV_A Location: 3771 44-37861 7 bp Feature: gene Location: 454190-456883 bp Feature: domain Description: CarbopepD_reg_2 Location: 454325-454532 bp Feature: domain Description: CarbopepD_reg_2 Location: 454325-454532 bp Feature: domain Description: COG2374 Location: 454652-454910 bp Feature: domain Description: COG2374 Location: 454652-45491 0 bp Feature: domain Description: COG2374 Location: 455114-455348 bp Feature: domain Description: COG2374 Location: 4551 1 4-455348 bp Feature: domain Description: COG2374 Location: 455393-456812 bp Feature: domain Description: COG2374 Location: 455393-45681 2 bp Feature: gene Location: 457003-458796 bp Feature: domain Description: CarboxypepD_reg Location: 457111-457324 bp Feature: domain Description: CarboxypepD_reg Location: 4571 1 1 -457324 bp Feature: domain Description: UshA Location: 457348-458764 bp Feature: domain Description: UshA Location: 457348-458764 bp Feature: gene Location: 459208-460371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459430-460051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459430-460051 bp Feature: domain Description: GIIM Note: maturase Location: 460096-460285 bp Feature: domain Description: GIIM Note: maturase Location: 460096-460285 bp Feature: gene Location: 461419-463824 bp Feature: domain Description: WG_beta_rep Location: 461599-461695 bp Feature: domain Description: WG_beta_rep Location: 461 599-461 695 bp Feature: domain Description: WG_beta_rep Location: 461839-461938 bp Feature: domain Description: WG_beta_rep Location: 461 839-461 938 bp Feature: domain Description: WG_beta_rep Location: 462052-462151 bp Feature: domain Description: WG_beta_rep Location: 462052-4621 51 bp Feature: domain Description: WG_beta_rep Location: 462154-462229 bp Feature: domain Description: WG_beta_rep Location: 4621 54-462229 bp Feature: domain Description: WG_beta_rep Location: 462532-462631 bp Feature: domain Description: WG_beta_rep Location: 462532-462631 bp Feature: domain Description: WG_beta_rep Location: 462631-462715 bp Feature: domain Description: WG_beta_rep Location: 462631 -46271 5 bp Feature: domain Description: WG_beta_rep Location: 462862-462961 bp Feature: domain Description: WG_beta_rep Location: 462862-462961 bp Feature: domain Description: WG_beta_rep Location: 463078-463138 bp Feature: domain Description: WG_beta_rep Location: 463078-4631 38 bp Feature: domain Description: WG_beta_rep Location: 463618-463720 bp Feature: domain Description: WG_beta_rep Location: 46361 8-463720 bp Feature: domain Description: WG_beta_rep Location: 463723-463807 bp Feature: domain Description: WG_beta_rep Location: 463723-463807 bp Feature: gene Location: 465218-466351 bp Feature: domain Description: DUF4372 Location: 465239-465422 bp Feature: domain Description: DUF4372 Location: 465239-465422 bp Feature: domain Description: DDE_Tnp_1 Location: 465578-466217 bp Feature: domain Description: DDE_Tnp_1 Location: 465578-46621 7 bp Feature: gene Location: 1095463-1096194 bp Feature: domain Description: GlnQ Location: 1095466-1096168 bp Feature: domain Description: GlnQ Location: 1 095466-1 0961 68 bp Feature: gene Location: 1096206-1098602 bp Feature: gene Location: 1099042-1100031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099153-1099711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0991 53-1 09971 1 bp Feature: domain Description: GIIM Note: maturase Location: 1099756-1099945 bp Feature: domain Description: GIIM Note: maturase Location: 1 099756-1 099945 bp Feature: gene Location: 1100627-1101448 bp Feature: domain Description: LptD Location: 1100873-1101125 bp Feature: domain Description: LptD Location: 1 1 00873-1 1 01 1 25 bp Feature: domain Description: LptD Location: 1101152-1101413 bp Feature: domain Description: LptD Location: 1 1 01 1 52-1 1 01 41 3 bp Feature: gene Location: 1101438-1102007 bp Feature: domain Description: LptC_YrbK Location: 1101459-1101969 bp Feature: domain Description: LptC_YrbK Location: 1 1 01 459-1 1 01 969 bp Feature: gene Location: 1125008-1125796 bp Feature: domain Description: flgG Location: 1125011-1125785 bp Feature: domain Description: flgG Location: 1 1 2501 1 -1 1 25785 bp Feature: gene Location: 1125816-1126574 bp Feature: domain Description: FlgG Location: 1125837-1126563 bp Feature: domain Description: FlgG Location: 1 1 25837-1 1 26563 bp Feature: gene Location: 1126786-1127949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1127008-1127629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 27008-1 1 27629 bp Feature: domain Description: GIIM Note: maturase Location: 1127674-1127863 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 27674-1 1 27863 bp Feature: gene Location: 1128745-1129008 bp Feature: domain Description: SpoIIID Location: 1128751-1128991 bp Feature: domain Description: SpoIIID Location: 1 1 28751 -1 1 28991 bp Feature: gene Location: 1129094-1129861 bp Feature: domain Description: NlpD Location: 1129307-1129859 bp Feature: domain Description: NlpD Location: 1 1 29307-1 1 29859 bp Feature: gene Location: 1195720-1195983 bp Feature: domain Description: spore_yabP Location: 1195744-1195981 bp Feature: domain Description: spore_yabP Location: 1 1 95744-1 1 95981 bp Feature: gene Location: 1196094-1196279 bp Feature: gene Location: 1196565-1197254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196568-1196934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 96568-1 1 96934 bp Feature: domain Description: GIIM Note: maturase Location: 1196979-1197168 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 96979-1 1 971 68 bp Feature: gene Location: 1197302-1197733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197524-1197713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 97524-1 1 9771 3 bp Feature: gene Location: 1198538-1199653 bp Feature: domain Description: ugpC Location: 1198541-1199645 bp Feature: domain Description: ugpC Location: 1 1 98541 -1 1 99645 bp Feature: gene Location: 1199675-1200667 bp Feature: domain Description: PurR Location: 1199684-1200665 bp Feature: domain Description: PurR Location: 1 1 99684-1 200665 bp Feature: gene Location: 1234859-1235416 bp Feature: gene Location: 1235670-1236515 bp Feature: gene Location: 1236756-1237919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236978-1237599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236978-1 237599 bp Feature: domain Description: GIIM Note: maturase Location: 1237644-1237833 bp Feature: domain Description: GIIM Note: maturase Location: 1 237644-1 237833 bp Feature: gene Location: 1238727-1239131 bp Feature: gene Location: 1239254-1239559 bp Feature: gene Location: 1313997-1314356 bp Feature: domain Description: OmpR Location: 1314006-1314348 bp Feature: domain Description: OmpR Location: 1 31 4006-1 31 4348 bp Feature: gene Location: 1314366-1316210 bp Feature: domain Description: HK_WalK Location: 1314384-1316199 bp Feature: domain Description: HK_WalK Location: 1 31 4384-1 31 61 99 bp Feature: gene Location: 1316508-1317362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1316514-1317042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 651 4-1 31 7042 bp Feature: domain Description: GIIM Note: maturase Location: 1317087-1317276 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 7087-1 31 7276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15317 (alkyl hydroperoxide reductase subunit F; Provisional), group_II_RT_mat (TIGR04416), RVT-GII, AbrB (pfam05145), flav_short (TIGR01753), HDGYP (COG2206), GIIM (pfam08388), HU (cd13831), spore_IV_A (TIGR02836), CarbopepD_reg_2 (pfam13715)
COG2374 (Predicted extracellular nuclease ), CarboxypepD_reg (pfam13620), UshA (COG0737), WG_beta_rep (pfam14903), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), GlnQ (COG1126), LptD (COG1452), LptC_YrbK (TIGR04409), flgG (PRK12819)
FlgG (COG4786), SpoIIID (pfam12116), NlpD (COG0739), spore_yabP (TIGR02892), ugpC (PRK11650), PurR (COG1609), OmpR (COG0745), HK_WalK (NF033092)

Seq: KB900618.1 Orenia marismortui DSM 5156 genomic scaffold OREMADRAFT_scaffold2.2, whole genome shotgun sequence (480926 bp)
Overview 1 RT 1: 445056-458282 bp Neighborhood of RT #1 [445056, 458308] COG1669 RVT_N RVT-GII GIIM COG1878 AcrR RVT_N RVT-GII GIIM YtxK Feature: gene Location: 445056-445346 bp Feature: domain Description: COG1669 Location: 445062-445341 bp Feature: domain Description: COG1669 Location: 445062 -445341 bp Feature: gene Location: 445408-445608 bp Feature: gene Location: 445618-447084 bp Feature: domain Description: RVT_N Location: 445690-445924 bp Feature: domain Description: RVT_N Location: 445690-44592 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445978-446635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445978-446635 bp Feature: domain Description: GIIM Note: maturase Location: 446689-446920 bp Feature: domain Description: GIIM Note: maturase Location: 446689-44692 0 bp Feature: gene Location: 447836-448522 bp Feature: domain Description: COG1878 Location: 447845-448514 bp Feature: domain Description: COG1878 Location: 447845-448514 bp Feature: gene Location: 449713-450465 bp Feature: gene Location: 452328-452864 bp Feature: gene Location: 452965-453555 bp Feature: domain Description: AcrR Location: 452992-453529 bp Feature: domain Description: AcrR Location: 452 992 -45352 9 bp Feature: gene Location: 454041-455507 bp Feature: domain Description: RVT_N Location: 454113-454347 bp Feature: domain Description: RVT_N Location: 454113-454347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454401-455058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454401-455058 bp Feature: domain Description: GIIM Note: maturase Location: 455112-455343 bp Feature: domain Description: GIIM Note: maturase Location: 455112 -455343 bp Feature: gene Location: 455993-456166 bp Feature: gene Location: 456698-458308 bp Feature: domain Description: YtxK Location: 456728-458282 bp Feature: domain Description: YtxK Location: 45672 8-4582 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1669 (Predicted nucleotidyltransferase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG1878 (Kynurenine formamidase ), AcrR (COG1309), YtxK (COG0827)

Seq: KB900620.1 Orenia marismortui DSM 5156 genomic scaffold OREMADRAFT_scaffold4.4, whole genome shotgun sequence (396395 bp)
Overview 1 RT 1: 387161-395349 bp Neighborhood of RT #1 [387161, 395378] PRK13482 Sms RVT-GII GIIM clpC PRK01059 Feature: gene Location: 387161-388270 bp Feature: domain Description: PRK13482 Location: 387176-388265 bp Feature: domain Description: PRK13 482 Location: 3 87176-3 88265 bp Feature: gene Location: 388284-389639 bp Feature: domain Description: Sms Location: 388287-389634 bp Feature: domain Description: Sms Location: 3 88287-3 8963 4 bp Feature: gene Location: 389888-390997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390053-390674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 90053 -3 90674 bp Feature: domain Description: GIIM Note: maturase Location: 390719-390917 bp Feature: domain Description: GIIM Note: maturase Location: 3 90719-3 90917 bp Feature: gene Location: 391895-394333 bp Feature: domain Description: clpC Location: 391904-394304 bp Feature: domain Description: clpC Location: 3 91904-3 943 04 bp Feature: gene Location: 394323-395378 bp Feature: domain Description: PRK01059 Location: 394335-395349 bp Feature: domain Description: PRK01059 Location: 3 943 3 5-3 953 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13482 (DNA integrity scanning protein DisA; Provisional), Sms (COG1066), RVT-GII, GIIM (pfam08388), clpC, PRK01059 (ATP:guanido phosphotransferase; Provisional)

Seq: KB900621.1 Orenia marismortui DSM 5156 genomic scaffold OREMADRAFT_scaffold5.5, whole genome shotgun sequence (163135 bp)
Overview 1 RT 1: 54524-63042 bp Neighborhood of RT #1 [54524, 63074] Adenylsuccinate_lyase_1 PRK01117 RVT-GII GIIM PFL1 PFLA Feature: gene Location: 54524-55819 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 54536-55805 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 54 536-55805 bp Feature: gene Location: 55868-57157 bp Feature: domain Description: PRK01117 Location: 55871-57149 bp Feature: domain Description: PRK01117 Location: 55871-5714 9 bp Feature: gene Location: 58096-59259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58318-58939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58318-58939 bp Feature: domain Description: GIIM Note: maturase Location: 58984-59173 bp Feature: domain Description: GIIM Note: maturase Location: 58984 -59173 bp Feature: gene Location: 59863-62079 bp Feature: domain Description: PFL1 Location: 59869-62068 bp Feature: domain Description: PFL1 Location: 59869-62068 bp Feature: gene Location: 62340-63074 bp Feature: domain Description: PFLA Location: 62358-63042 bp Feature: domain Description: PFLA Location: 62358-6304 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Adenylsuccinate_lyase_1 (cd01360), PRK01117 (adenylosuccinate synthetase; Provisional), RVT-GII, GIIM (pfam08388), PFL1 (cd01678), PFLA (TIGR02493)