myRT

myRT report for GCA_000379065.1_ASM37906v1

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Seq: KB900614.1 Salinispora pacifica DSM 45549 genomic scaffold Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence (5092107 bp)
Overview 1 RT 1: 1416766-1422347 bp 2 RT 2: 4677516-4681861 bp Neighborhood of RT #1 [1416766, 1422347] RpoE Inhibitor_I36 RVT-GII RVT-GII GIIM RCC1 RCC1 RCC1 Big_3_5 Neighborhood of RT #2 [4677516, 4681962] HTH_32 HTH_Tnp_4 DDE_Tnp_4 RVT-GII RVT-GII group_II_RT_mat PhdYeFM_antitox Feature: gene Location: 1416766-1417377 bp Feature: domain Description: RpoE Location: 1416844-1417357 bp Feature: domain Description: RpoE Location: 1 41 6844-1 41 7357 bp Feature: gene Location: 1417756-1418427 bp Feature: domain Description: Inhibitor_I36 Location: 1418137-1418341 bp Feature: domain Description: Inhibitor_I36 Location: 1 41 81 37-1 41 8341 bp Feature: gene Location: 1419070-1419570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419385-1419553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 9385-1 41 9553 bp Feature: gene Location: 1419583-1420239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419589-1420015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 9589-1 42001 5 bp Feature: domain Description: GIIM Note: maturase Location: 1420102-1420228 bp Feature: domain Description: GIIM Note: maturase Location: 1 4201 02-1 420228 bp Feature: gene Location: 1421597-1423144 bp Feature: domain Description: RCC1 Location: 1422221-1422365 bp Feature: domain Description: RCC1 Location: 1 422221 -1 422365 bp Feature: domain Description: RCC1 Location: 1422377-1422521 bp Feature: domain Description: RCC1 Location: 1 422377-1 422521 bp Feature: domain Description: RCC1 Location: 1422533-1422677 bp Feature: domain Description: RCC1 Location: 1 422533-1 422677 bp Feature: domain Description: Big_3_5 Location: 1422722-1422974 bp Feature: domain Description: Big_3_5 Location: 1 422722-1 422974 bp Feature: gene Location: 1422027-1422347 bp Feature: gene Location: 4677516-4677860 bp Feature: domain Description: HTH_32 Location: 4677585-4677798 bp Feature: domain Description: HTH_32 Location: 4677585-4677798 bp Feature: gene Location: 4678035-4678739 bp Feature: domain Description: HTH_Tnp_4 Location: 4678041-4678152 bp Feature: domain Description: HTH_Tnp_4 Location: 4678041 -46781 52 bp Feature: domain Description: DDE_Tnp_4 Location: 4678218-4678704 bp Feature: domain Description: DDE_Tnp_4 Location: 467821 8-4678704 bp Feature: gene Location: 4679952-4680323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680246-4680318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680246-468031 8 bp Feature: gene Location: 4680324-4680707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680327-4680705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680327-4680705 bp Feature: gene Location: 4680756-4681313 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4680762-4681110 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4680762-4681 1 1 0 bp Feature: gene Location: 4681708-4681962 bp Feature: domain Description: PhdYeFM_antitox Location: 4681714-4681861 bp Feature: domain Description: PhdYeFM_antitox Location: 4681 71 4-4681 861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), Inhibitor_I36 (pfam03995), RVT-GII, GIIM (pfam08388), RCC1 (pfam00415), Big_3_5 (pfam16640), HTH_32 (pfam13565), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), group_II_RT_mat (TIGR04416)
PhdYeFM_antitox (pfam02604)