myRT

myRT report for GCA_000379125.1_ASM37912v1

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Seq: KB900627.1 Methylosinus sp. LW4 genomic scaffold MetLW4DRAFT_scaffold2.2, whole genome shotgun sequence (842783 bp)
Overview 1 RT 1: 149632-155645 bp 2 RT 2: 608780-612518 bp 3 RT 3: 833618-839281 bp Neighborhood of RT #1 [149632, 155725] OmpR BaeS RVT-GII GIIM PepSY_TM Neighborhood of RT #2 [608780, 612556] HTH_1 PBP2_DntR_like_3 RVT-GII GlxA MFS_PcaK_like Neighborhood of RT #3 [833618, 839367] DDE_Tnp_1_assoc YhhI YhhI RVT-GII TIR_2 YfmG Transposase_mut Feature: gene Location: 149632-150309 bp Feature: domain Description: OmpR Location: 149641-150301 bp Feature: domain Description: OmpR Location: 1 49641 -1 50301 bp Feature: gene Location: 150306-151724 bp Feature: domain Description: BaeS Location: 150813-151662 bp Feature: domain Description: BaeS Location: 1 5081 3-1 51 662 bp Feature: gene Location: 152534-153793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152738-153398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52738-1 53398 bp Feature: domain Description: GIIM Note: maturase Location: 153476-153707 bp Feature: domain Description: GIIM Note: maturase Location: 1 53476-1 53707 bp Feature: gene Location: 154063-154308 bp Feature: gene Location: 154457-155725 bp Feature: domain Description: PepSY_TM Location: 154481-155645 bp Feature: domain Description: PepSY_TM Location: 1 54481 -1 55645 bp Feature: gene Location: 608780-609706 bp Feature: domain Description: HTH_1 Location: 608804-608978 bp Feature: domain Description: HTH_1 Location: 608804-608978 bp Feature: domain Description: PBP2_DntR_like_3 Location: 609074-609665 bp Feature: domain Description: PBP2_DntR_like_3 Location: 609074-609665 bp Feature: gene Location: 609748-609930 bp Feature: gene Location: 610001-610147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610004-610139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 0004-61 01 39 bp Feature: gene Location: 610568-610984 bp Feature: domain Description: GlxA Location: 610571-610952 bp Feature: domain Description: GlxA Location: 61 0571 -61 0952 bp Feature: gene Location: 611234-612556 bp Feature: domain Description: MFS_PcaK_like Location: 611306-612518 bp Feature: domain Description: MFS_PcaK_like Location: 61 1 306-61 251 8 bp Feature: gene Location: 833618-833863 bp Feature: gene Location: 834064-835209 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 834121-834379 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 8341 21 -834379 bp Feature: domain Description: YhhI Location: 834517-834757 bp Feature: domain Description: YhhI Location: 83451 7-834757 bp Feature: domain Description: YhhI Location: 834895-835138 bp Feature: domain Description: YhhI Location: 834895-8351 38 bp Feature: gene Location: 835886-836593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836240-836576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836240-836576 bp Feature: gene Location: 836758-838800 bp Feature: domain Description: TIR_2 Location: 837358-837715 bp Feature: domain Description: TIR_2 Location: 837358-83771 5 bp Feature: domain Description: YfmG Location: 837985-838699 bp Feature: domain Description: YfmG Location: 837985-838699 bp Feature: gene Location: 838885-839367 bp Feature: domain Description: Transposase_mut Location: 838891-839281 bp Feature: domain Description: Transposase_mut Location: 838891 -839281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), BaeS (COG0642), RVT-GII, GIIM (pfam08388), PepSY_TM (pfam03929), HTH_1 (pfam00126), PBP2_DntR_like_3 (cd08461), GlxA (COG4977), MFS_PcaK_like (cd17365), DDE_Tnp_1_assoc (pfam13808)
YhhI (COG5433), TIR_2 (pfam13676), YfmG (COG1262), Transposase_mut (pfam00872)