myRT

myRT report for GCA_000379145.1_ASM37914v1

Download annotations/find similar RTs

Seq: KB900701.1 Bradyrhizobium elkanii USDA 76 genomic scaffold BraelDRAFT_scaffold1.1, whole genome shotgun sequence (9116505 bp)
Overview 1 RT 1: 291920-297820 bp 2 RT 2: 2252700-2255681 bp 3 RT 3: 2261362-2265840 bp 4 RT 4: 3431865-3437069 bp 5 RT 5: 8928515-8935425 bp Neighborhood of RT #1 [291920, 297867] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII PBP2_LTTR_aromatics_like Neighborhood of RT #2 [2252700, 2255681] RVT-GII RVT-GII Neighborhood of RT #3 [2261362, 2265840] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #4 [3431865, 3438034] HTH_ARSR COG3177 RVT-Retrons Trypsin_2 Pyr_redox_2 Neighborhood of RT #5 [8928515, 8935628] SIR2 Piwi_piwi-like_ProArk RVT-Retrons Trypsin_2 UbiE Feature: gene Location: 291920-292969 bp Feature: domain Description: Zn_Tnp_IS91 Location: 291926-292094 bp Feature: domain Description: Zn_Tnp_IS91 Location: 291 926-292094 bp Feature: domain Description: Y2_Tnp Location: 292220-292769 bp Feature: domain Description: Y2_Tnp Location: 292220-292769 bp Feature: gene Location: 293103-293963 bp Feature: domain Description: Phage_int_SAM_4 Location: 293124-293355 bp Feature: domain Description: Phage_int_SAM_4 Location: 2931 24-293355 bp Feature: domain Description: INT_IntI_C Location: 293403-293892 bp Feature: domain Description: INT_IntI_C Location: 293403-293892 bp Feature: gene Location: 294178-295653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294586-295276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294586-295276 bp Feature: gene Location: 295888-296025 bp Feature: gene Location: 297082-297867 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 297232-297820 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 297232-297820 bp Feature: gene Location: 2252700-2252837 bp Feature: gene Location: 2253135-2253437 bp Feature: gene Location: 2253559-2253831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253562-2253820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253562-2253820 bp Feature: gene Location: 2253864-2254550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253867-2254173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253867-22541 73 bp Feature: gene Location: 2254871-2255023 bp Feature: gene Location: 2255277-2255681 bp Feature: gene Location: 2261362-2262030 bp Feature: domain Description: PHA02518 Location: 2261371-2261968 bp Feature: domain Description: PHA0251 8 Location: 2261 371 -2261 968 bp Feature: gene Location: 2262474-2263310 bp Feature: domain Description: LomR Location: 2262510-2263221 bp Feature: domain Description: LomR Location: 226251 0-2263221 bp Feature: gene Location: 2263597-2264574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263603-2264200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263603-2264200 bp Feature: domain Description: GIIM Note: maturase Location: 2264266-2264488 bp Feature: domain Description: GIIM Note: maturase Location: 2264266-2264488 bp Feature: gene Location: 2264811-2265536 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2264829-2265264 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2264829-2265264 bp Feature: gene Location: 2265664-2265840 bp Feature: gene Location: 3431865-3433178 bp Feature: domain Description: HTH_ARSR Location: 3431877-3432072 bp Feature: domain Description: HTH_ARSR Location: 3431 877-3432072 bp Feature: domain Description: COG3177 Location: 3432264-3433050 bp Feature: domain Description: COG31 77 Location: 3432264-3433050 bp Feature: gene Location: 3433244-3433471 bp Feature: gene Location: 3433597-3435195 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3433756-3434356 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3433756-3434356 bp Feature: domain Description: Trypsin_2 Location: 3434713-3435115 bp Feature: domain Description: Trypsin_2 Location: 343471 3-34351 1 5 bp Feature: gene Location: 3435523-3435696 bp Feature: gene Location: 3436490-3438034 bp Feature: domain Description: Pyr_redox_2 Location: 3436664-3437069 bp Feature: domain Description: Pyr_redox_2 Location: 3436664-3437069 bp Feature: gene Location: 8928515-8930257 bp Feature: domain Description: SIR2 Location: 8928590-8929157 bp Feature: domain Description: SIR2 Location: 8928590-89291 57 bp Feature: gene Location: 8930254-8931675 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 8930299-8931631 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 8930299-8931 631 bp Feature: gene Location: 8931757-8933355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8931919-8932516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8931 91 9-893251 6 bp Feature: domain Description: Trypsin_2 Location: 8932873-8933275 bp Feature: domain Description: Trypsin_2 Location: 8932873-8933275 bp Feature: gene Location: 8934349-8934672 bp Feature: gene Location: 8934768-8935628 bp Feature: domain Description: UbiE Location: 8935011-8935425 bp Feature: domain Description: UbiE Location: 893501 1 -8935425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, PBP2_LTTR_aromatics_like (cd08414), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)
HTH_ARSR (smart00418), COG3177 (Fic family protein ), RVT-Retrons, Trypsin_2 (pfam13365), Pyr_redox_2 (pfam07992), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), UbiE (COG2226)

Seq: KB900702.1 Bradyrhizobium elkanii USDA 76 genomic scaffold BraelDRAFT_scaffold2.2, whole genome shotgun sequence (368262 bp)
Overview 1 RT 1: 239272-243536 bp Neighborhood of RT #1 [239272, 243550] DDE_3 RVT-GII RVT-GII DDE_5 DDE_Tnp_1_2 Feature: gene Location: 239272-239877 bp Feature: domain Description: DDE_3 Location: 239350-239749 bp Feature: domain Description: DDE_3 Location: 2 39350-2 39749 bp Feature: gene Location: 239489-240265 bp Feature: gene Location: 240789-241157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240798-241083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 40798-2 41083 bp Feature: gene Location: 241154-241771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241166-241376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 41166-2 41376 bp Feature: gene Location: 241854-243167 bp Feature: domain Description: DDE_5 Location: 241896-242688 bp Feature: domain Description: DDE_5 Location: 2 41896-2 42 688 bp Feature: gene Location: 243278-243550 bp Feature: domain Description: DDE_Tnp_1_2 Location: 243293-243536 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2 432 93-2 43536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, DDE_5 (pfam13546), DDE_Tnp_1_2 (pfam13586)