myRT

myRT report for GCA_000379365.1_ASM37936v1

Download annotations/find similar RTs

Seq: KB901875.1 Verrucomicrobium sp. 3C genomic scaffold A37ADRAFT_scaffold1.1, whole genome shotgun sequence (2050659 bp)
Overview 1 RT 1: 5112-9908 bp 2 RT 2: 36162-39885 bp 3 RT 3: 144229-147836 bp 4 RT 4: 456887-461279 bp 5 RT 5: 522606-528004 bp 6 RT 6: 874198-878666 bp 7 RT 7: 1592360-1599798 bp 8 RT 8: 1766626-1771854 bp 9 RT 9: 1901703-1906007 bp 10 RT 10: 1990517-1995778 bp 11 RT 11: 2016190-2023054 bp Neighborhood of RT #1 [5112, 9943] IS285 RVT-GII GIIM IS285 HTH_17 Neighborhood of RT #2 [36162, 39885] RVT-GII HupH_C HupH_C Neighborhood of RT #3 [144229, 147877] StbC RVT-GII GIIM COG3551 Neighborhood of RT #4 [456887, 461279] xerC RVT-GII GIIM Neighborhood of RT #5 [522606, 528004] HipB ImmA RVT-GII GIIM COG5421 Neighborhood of RT #6 [874198, 878666] DDE_3 RVT-GII Neighborhood of RT #7 [1592360, 1599815] uvrA tol_pal_ybgF TPR TPR tol_pal_ybgF tol_pal_ybgF tol_pal_ybgF tol_pal_ybgF RVT-GII GIIM InsE PHA02517 Neighborhood of RT #8 [1766626, 1772315] lnt GIIM RVT-GII SurA_N_3 Rotamase_2 Neighborhood of RT #9 [1901703, 1906012] RVT-GII GIIM HycE1 HycE2 Neighborhood of RT #10 [1990517, 1995798] RVT-GII GIIM UppP Neighborhood of RT #11 [2016190, 2023401] RVT-GII RVT-GII GIIM RVT-GII GIIM Methyltransf_11 Methyltransf_25 Feature: gene Location: 5112-5627 bp Feature: gene Location: 5687-6193 bp Feature: domain Description: IS285 Location: 5696-6179 bp Feature: domain Description: IS285 Location: 5696-61 79 bp Feature: gene Location: 6717-7961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6921-7581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6921 -7581 bp Feature: domain Description: GIIM Note: maturase Location: 7665-7887 bp Feature: domain Description: GIIM Note: maturase Location: 7665-7887 bp Feature: gene Location: 7972-8706 bp Feature: domain Description: IS285 Location: 8041-8689 bp Feature: domain Description: IS285 Location: 8041 -8689 bp Feature: gene Location: 9701-9943 bp Feature: domain Description: HTH_17 Location: 9779-9908 bp Feature: domain Description: HTH_1 7 Location: 9779-9908 bp Feature: gene Location: 36162-36296 bp Feature: gene Location: 36714-36854 bp Feature: gene Location: 36854-37747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37043-37532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37043-37532 bp Feature: gene Location: 38706-39569 bp Feature: domain Description: HupH_C Location: 38898-39168 bp Feature: domain Description: HupH_C Location: 38898-391 68 bp Feature: domain Description: HupH_C Location: 39207-39543 bp Feature: domain Description: HupH_C Location: 39207-39543 bp Feature: gene Location: 39523-39885 bp Feature: gene Location: 144229-144486 bp Feature: domain Description: StbC Location: 144232-144403 bp Feature: domain Description: StbC Location: 1 44232-1 44403 bp Feature: gene Location: 144649-144819 bp Feature: gene Location: 144950-145918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144956-145547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44956-1 45547 bp Feature: domain Description: GIIM Note: maturase Location: 145619-145820 bp Feature: domain Description: GIIM Note: maturase Location: 1 4561 9-1 45820 bp Feature: gene Location: 145938-146264 bp Feature: gene Location: 146819-147877 bp Feature: domain Description: COG3551 Location: 146822-147836 bp Feature: domain Description: COG3551 Location: 1 46822-1 47836 bp Feature: gene Location: 456887-457873 bp Feature: gene Location: 458265-459263 bp Feature: domain Description: xerC Location: 458421-459141 bp Feature: domain Description: xerC Location: 458421 -4591 41 bp Feature: gene Location: 459987-460721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459993-460071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459993-460071 bp Feature: domain Description: GIIM Note: maturase Location: 460143-460302 bp Feature: domain Description: GIIM Note: maturase Location: 4601 43-460302 bp Feature: gene Location: 460158-460877 bp Feature: gene Location: 460896-461279 bp Feature: gene Location: 522606-523742 bp Feature: domain Description: HipB Location: 522648-522870 bp Feature: domain Description: HipB Location: 522648-522870 bp Feature: domain Description: ImmA Location: 523218-523425 bp Feature: domain Description: ImmA Location: 52321 8-523425 bp Feature: gene Location: 523749-524264 bp Feature: gene Location: 525023-526213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525311-525971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52531 1 -525971 bp Feature: domain Description: GIIM Note: maturase Location: 526040-526184 bp Feature: domain Description: GIIM Note: maturase Location: 526040-5261 84 bp Feature: gene Location: 526338-527753 bp Feature: domain Description: COG5421 Location: 526554-527718 bp Feature: domain Description: COG5421 Location: 526554-52771 8 bp Feature: gene Location: 527801-528004 bp Feature: gene Location: 874198-874557 bp Feature: domain Description: DDE_3 Location: 874225-874528 bp Feature: domain Description: DDE_3 Location: 874225-874528 bp Feature: gene Location: 874908-875378 bp Feature: gene Location: 875534-876085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875822-876080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875822-876080 bp Feature: gene Location: 876881-877486 bp Feature: gene Location: 877530-878666 bp Feature: gene Location: 1592360-1595245 bp Feature: domain Description: uvrA Location: 1592372-1595189 bp Feature: domain Description: uvrA Location: 1 592372-1 5951 89 bp Feature: gene Location: 1595275-1597770 bp Feature: domain Description: tol_pal_ybgF Location: 1595365-1595518 bp Feature: domain Description: tol_pal_ybgF Location: 1 595365-1 59551 8 bp Feature: domain Description: TPR Location: 1595569-1595866 bp Feature: domain Description: TPR Location: 1 595569-1 595866 bp Feature: domain Description: TPR Location: 1596010-1596406 bp Feature: domain Description: TPR Location: 1 59601 0-1 596406 bp Feature: domain Description: tol_pal_ybgF Location: 1596562-1596874 bp Feature: domain Description: tol_pal_ybgF Location: 1 596562-1 596874 bp Feature: domain Description: tol_pal_ybgF Location: 1597018-1597174 bp Feature: domain Description: tol_pal_ybgF Location: 1 59701 8-1 5971 74 bp Feature: domain Description: tol_pal_ybgF Location: 1597201-1597366 bp Feature: domain Description: tol_pal_ybgF Location: 1 597201 -1 597366 bp Feature: domain Description: tol_pal_ybgF Location: 1597375-1597534 bp Feature: domain Description: tol_pal_ybgF Location: 1 597375-1 597534 bp Feature: gene Location: 1597984-1598757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598212-1598386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59821 2-1 598386 bp Feature: domain Description: GIIM Note: maturase Location: 1598455-1598665 bp Feature: domain Description: GIIM Note: maturase Location: 1 598455-1 598665 bp Feature: gene Location: 1598629-1598958 bp Feature: domain Description: InsE Location: 1598662-1598941 bp Feature: domain Description: InsE Location: 1 598662-1 598941 bp Feature: gene Location: 1598967-1599815 bp Feature: domain Description: PHA02517 Location: 1599033-1599798 bp Feature: domain Description: PHA0251 7 Location: 1 599033-1 599798 bp Feature: gene Location: 1766626-1768257 bp Feature: domain Description: lnt Location: 1766719-1768207 bp Feature: domain Description: lnt Location: 1 76671 9-1 768207 bp Feature: gene Location: 1768722-1769027 bp Feature: domain Description: GIIM Note: maturase Location: 1768728-1768935 bp Feature: domain Description: GIIM Note: maturase Location: 1 768728-1 768935 bp Feature: gene Location: 1769544-1770104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769793-1770099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769793-1 770099 bp Feature: gene Location: 1770240-1770497 bp Feature: gene Location: 1770792-1772315 bp Feature: domain Description: SurA_N_3 Location: 1770795-1771272 bp Feature: domain Description: SurA_N_3 Location: 1 770795-1 771 272 bp Feature: domain Description: Rotamase_2 Location: 1771482-1771854 bp Feature: domain Description: Rotamase_2 Location: 1 771 482-1 771 854 bp Feature: gene Location: 1901703-1901903 bp Feature: gene Location: 1902527-1902832 bp Feature: gene Location: 1902858-1903454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1902906-1903083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 902906-1 903083 bp Feature: domain Description: GIIM Note: maturase Location: 1903152-1903356 bp Feature: domain Description: GIIM Note: maturase Location: 1 9031 52-1 903356 bp Feature: gene Location: 1903483-1904421 bp Feature: gene Location: 1904432-1906012 bp Feature: domain Description: HycE1 Location: 1904711-1904879 bp Feature: domain Description: HycE1 Location: 1 90471 1 -1 904879 bp Feature: domain Description: HycE2 Location: 1904927-1906007 bp Feature: domain Description: HycE2 Location: 1 904927-1 906007 bp Feature: gene Location: 1990517-1991014 bp Feature: gene Location: 1991216-1992694 bp Feature: gene Location: 1993037-1994356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993325-1993985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 993325-1 993985 bp Feature: domain Description: GIIM Note: maturase Location: 1994054-1994258 bp Feature: domain Description: GIIM Note: maturase Location: 1 994054-1 994258 bp Feature: gene Location: 1994813-1994962 bp Feature: gene Location: 1994998-1995798 bp Feature: domain Description: UppP Location: 1995007-1995778 bp Feature: domain Description: UppP Location: 1 995007-1 995778 bp Feature: gene Location: 2016190-2016714 bp Feature: gene Location: 2016900-2017316 bp Feature: gene Location: 2018462-2019001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018570-2018996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 8570-201 8996 bp Feature: gene Location: 2019009-2019602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2019012-2019189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 901 2-201 91 89 bp Feature: domain Description: GIIM Note: maturase Location: 2019297-2019507 bp Feature: domain Description: GIIM Note: maturase Location: 201 9297-201 9507 bp Feature: gene Location: 2019774-2021093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2020062-2020722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2020062-2020722 bp Feature: domain Description: GIIM Note: maturase Location: 2020791-2020995 bp Feature: domain Description: GIIM Note: maturase Location: 2020791 -2020995 bp Feature: gene Location: 2021718-2022680 bp Feature: domain Description: Methyltransf_11 Location: 2022207-2022531 bp Feature: domain Description: Methyltransf_1 1 Location: 2022207-2022531 bp Feature: gene Location: 2022652-2023401 bp Feature: domain Description: Methyltransf_25 Location: 2022796-2023054 bp Feature: domain Description: Methyltransf_25 Location: 2022796-2023054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), HupH_C (pfam04809), StbC (COG4691), COG3551 (Uncharacterized protein ), xerC (PRK01287), HipB (COG1396), ImmA (COG2856)
COG5421 (Transposase ), DDE_3 (pfam13358), uvrA (PRK00349), tol_pal_ybgF (TIGR02795), TPR (smart00028), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), lnt (TIGR00546), SurA_N_3 (pfam13624), Rotamase_2 (pfam13145)
HycE1 (COG3262), HycE2 (COG3261), UppP (COG1968), Methyltransf_11 (pfam08241), Methyltransf_25 (pfam13649)

Seq: KB901876.1 Verrucomicrobium sp. 3C genomic scaffold A37ADRAFT_scaffold2.2, whole genome shotgun sequence (346592 bp)
Overview 1 RT 1: 333-4731 bp Neighborhood of RT #1 [333, 4731] RVT-GII RVT-GII GIIM RVT-GII GIIM bact_SorA_Moco Feature: gene Location: 333-554 bp Feature: gene Location: 865-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1069-1450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1069-1450 bp Feature: gene Location: 1554-2123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566-172 5 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2025 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2 02 5 bp Feature: gene Location: 2120-2749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192-2327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 192 -2 32 7 bp Feature: domain Description: GIIM Note: maturase Location: 2387-2615 bp Feature: domain Description: GIIM Note: maturase Location: 2 387-2 615 bp Feature: gene Location: 2960-4273 bp Feature: domain Description: bact_SorA_Moco Location: 3170-4250 bp Feature: domain Description: bact_SorA_Moco Location: 3170-42 50 bp Feature: gene Location: 4270-4731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), bact_SorA_Moco (cd02114)

Seq: KB901877.1 Verrucomicrobium sp. 3C genomic scaffold A37ADRAFT_scaffold3.3, whole genome shotgun sequence (238825 bp)
Overview 1 RT 1: 219260-224336 bp Neighborhood of RT #1 [219260, 224336] COG5421 RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 219260-219859 bp Feature: gene Location: 220095-220622 bp Feature: domain Description: COG5421 Location: 220242-220407 bp Feature: domain Description: COG5421 Location: 220242-220407 bp Feature: gene Location: 221182-221652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221188-221278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221188-221278 bp Feature: domain Description: GIIM Note: maturase Location: 221350-221554 bp Feature: domain Description: GIIM Note: maturase Location: 2213 50-221554 bp Feature: gene Location: 222326-223645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222614-223274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222614-223 274 bp Feature: domain Description: GIIM Note: maturase Location: 223343-223547 bp Feature: domain Description: GIIM Note: maturase Location: 223 3 43 -223 547 bp Feature: gene Location: 223863-224006 bp Feature: gene Location: 224208-224336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: KB901878.1 Verrucomicrobium sp. 3C genomic scaffold A37ADRAFT_scaffold4.4, whole genome shotgun sequence (128028 bp)
Overview 1 RT 1: 3-1891 bp 2 RT 2: 110966-114152 bp 3 RT 3: 121468-126196 bp Neighborhood of RT #1 [3, 1891] RVT-GII Neighborhood of RT #2 [110966, 114152] NIPSNAP RVT-GII GIIM COG2452 Neighborhood of RT #3 [121468, 126196] RVT-GII GIIM Feature: gene Location: 3-467 bp Feature: gene Location: 475-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529-667 bp Feature: gene Location: 1190-1525 bp Feature: gene Location: 1751-1891 bp Feature: gene Location: 110966-111286 bp Feature: domain Description: NIPSNAP Location: 110975-111272 bp Feature: domain Description: NIPSNAP Location: 110975-111272 bp Feature: gene Location: 111405-111707 bp Feature: gene Location: 112437-112907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112443-112533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1124 4 3-112533 bp Feature: domain Description: GIIM Note: maturase Location: 112605-112815 bp Feature: domain Description: GIIM Note: maturase Location: 112605-112815 bp Feature: gene Location: 113105-113839 bp Feature: domain Description: COG2452 Location: 113285-113825 bp Feature: domain Description: COG24 52 Location: 113285-113825 bp Feature: gene Location: 113832-114152 bp Feature: gene Location: 121468-122082 bp Feature: gene Location: 122085-122411 bp Feature: gene Location: 122760-124040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123009-123669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123009-123669 bp Feature: domain Description: GIIM Note: maturase Location: 123738-123948 bp Feature: domain Description: GIIM Note: maturase Location: 123738-12394 8 bp Feature: gene Location: 125290-125748 bp Feature: gene Location: 125765-126196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NIPSNAP (pfam07978), GIIM (pfam08388), COG2452 (Predicted site-specific integrase-resolvase )