myRT

myRT report for GCA_000379465.1_ASM37946v1

Download annotations/find similar RTs

Seq: KB905384.1 Sciscionella marina DSM 45152 genomic scaffold A37UDRAFT_scaffold_12.13, whole genome shotgun sequence (152056 bp)
Overview 1 RT 1: 127153-130864 bp Neighborhood of RT #1 [127153, 131976] PRK02101 pfam03781 RVT-CRISPR-like QueC HTH_XRE Feature: gene Location: 127153-127608 bp Feature: domain Description: PRK02101 Location: 127222-127447 bp Feature: domain Description: PRK021 01 Location: 1 27222-1 27447 bp Feature: gene Location: 127605-128153 bp Feature: domain Description: pfam03781 Location: 127713-128145 bp Feature: domain Description: pfam03781 Location: 1 2771 3-1 281 45 bp Feature: gene Location: 128158-129138 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 128581-129100 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 28581 -1 291 00 bp Feature: gene Location: 129138-129905 bp Feature: domain Description: QueC Location: 129231-129891 bp Feature: domain Description: QueC Location: 1 29231 -1 29891 bp Feature: gene Location: 130726-131976 bp Feature: domain Description: HTH_XRE Location: 130729-130864 bp Feature: domain Description: HTH_XRE Location: 1 30729-1 30864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02101 (peroxide stress protein YaaA), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-CRISPR, QueC (pfam06508), HTH_XRE (smart00530)

Seq: KB905415.1 Sciscionella marina DSM 45152 genomic scaffold A37UDRAFT_scaffold_40.41, whole genome shotgun sequence (31193 bp)
Overview 1 RT 1: 4545-9050 bp Neighborhood of RT #1 [4545, 9082] RVT-GII GIIM RVT-GII QOR1 R_hydratase_like Feature: gene Location: 4545-4961 bp Feature: gene Location: 5012-5140 bp Feature: gene Location: 5269-5790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5275-5356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 75-5356 bp Feature: domain Description: GIIM Note: maturase Location: 5428-5647 bp Feature: domain Description: GIIM Note: maturase Location: 542 8-5647 bp Feature: gene Location: 5828-6724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152-6692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152 -6692 bp Feature: gene Location: 7430-8398 bp Feature: domain Description: QOR1 Location: 7433-8390 bp Feature: domain Description: QOR1 Location: 7433-8390 bp Feature: gene Location: 8666-9082 bp Feature: domain Description: R_hydratase_like Location: 8690-9050 bp Feature: domain Description: R_hydratase_like Location: 8690-9050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), QOR1 (cd08241), R_hydratase_like (cd03441)

Seq: KB905425.1 Sciscionella marina DSM 45152 genomic scaffold A37UDRAFT_scaffold_5.6, whole genome shotgun sequence (453413 bp)
Overview 1 RT 1: 56633-61249 bp 2 RT 2: 129875-133104 bp 3 RT 3: 316402-322674 bp Neighborhood of RT #1 [56633, 61482] HTH_XRE QueC RVT-CRISPR-like FGE-sulfatase PRK02101 Neighborhood of RT #2 [129875, 133104] pfam03781 RVT-CRISPR-like QueC Neighborhood of RT #3 [316402, 322676] PRK04210 RVT-Retrons ArgO F420_MSMEG_2516 Feature: gene Location: 56633-57913 bp Feature: domain Description: HTH_XRE Location: 56639-56777 bp Feature: domain Description: HTH_XRE Location: 5663 9-56777 bp Feature: gene Location: 58730-59497 bp Feature: domain Description: QueC Location: 58823-59483 bp Feature: domain Description: QueC Location: 58823 -59483 bp Feature: gene Location: 59497-60477 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 59905-60442 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 59905-60442 bp Feature: gene Location: 60482-61030 bp Feature: domain Description: FGE-sulfatase Location: 60587-61022 bp Feature: domain Description: FGE-sulfatase Location: 60587-61022 bp Feature: gene Location: 61027-61482 bp Feature: domain Description: PRK02101 Location: 61108-61249 bp Feature: domain Description: PRK02101 Location: 61108-61249 bp Feature: gene Location: 129875-130363 bp Feature: gene Location: 130360-130917 bp Feature: domain Description: pfam03781 Location: 130504-130909 bp Feature: domain Description: pfam03 781 Location: 13 0504-13 0909 bp Feature: gene Location: 130921-131907 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 131332-131869 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 13 13 3 2-13 1869 bp Feature: gene Location: 131915-132679 bp Feature: domain Description: QueC Location: 132011-132671 bp Feature: domain Description: QueC Location: 13 2011-13 2671 bp Feature: gene Location: 132622-133104 bp Feature: gene Location: 316402-317124 bp Feature: gene Location: 317612-319372 bp Feature: domain Description: PRK04210 Location: 317618-319367 bp Feature: domain Description: PRK04210 Location: 3 17618-3 193 67 bp Feature: gene Location: 319728-321044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 320169-320811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 20169-3 20811 bp Feature: gene Location: 320998-321804 bp Feature: domain Description: ArgO Location: 321199-321775 bp Feature: domain Description: ArgO Location: 3 21199-3 21775 bp Feature: gene Location: 321810-322676 bp Feature: domain Description: F420_MSMEG_2516 Location: 321828-322674 bp Feature: domain Description: F420_MSMEG_2516 Location: 3 21828-3 22674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), QueC (pfam06508), RVT-CRISPR, FGE-sulfatase (pfam03781), PRK02101 (peroxide stress protein YaaA), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), PRK04210 (phosphoenolpyruvate carboxykinase (GTP)), RVT-Retrons, ArgO (COG1279), F420_MSMEG_2516 (TIGR03621)