myRT

myRT report for GCA_000379505.1_ASM37950v1

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Seq: KB902317.1 Desulfitobacterium hafniense PCP-1 genomic scaffold A37YDRAFT_scaffold_0.1, whole genome shotgun sequence (731556 bp)
Overview 1 RT 1: 28061-30741 bp 2 RT 2: 92795-97006 bp Neighborhood of RT #1 [28061, 30741] RVT-GII GIIM Neighborhood of RT #2 [92795, 97006] KOG4404 YcxB RVT-GII Intron_maturas2 Feature: gene Location: 28061-28318 bp Feature: gene Location: 28402-28602 bp Feature: gene Location: 28708-30117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29062-29680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29062-29680 bp Feature: domain Description: GIIM Note: maturase Location: 29731-29959 bp Feature: domain Description: GIIM Note: maturase Location: 29731 -29959 bp Feature: gene Location: 30200-30382 bp Feature: gene Location: 30592-30741 bp Feature: gene Location: 92795-93142 bp Feature: gene Location: 93200-93769 bp Feature: domain Description: KOG4404 Location: 93248-93353 bp Feature: domain Description: KOG4404 Location: 93248-93353 bp Feature: domain Description: YcxB Location: 93557-93728 bp Feature: domain Description: YcxB Location: 93557-93728 bp Feature: gene Location: 93871-95646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94144-94936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 44-94936 bp Feature: domain Description: Intron_maturas2 Location: 95017-95308 bp Feature: domain Description: Intron_maturas2 Location: 9501 7-95308 bp Feature: gene Location: 95638-95901 bp Feature: gene Location: 96152-97006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG4404 (KOG4404, Tandem pore domain K+ channel TASK3/THIK-1 ), YcxB (pfam14317), Intron_maturas2 (pfam01348)

Seq: KB902324.1 Desulfitobacterium hafniense PCP-1 genomic scaffold A37YDRAFT_scaffold_15.16, whole genome shotgun sequence (97308 bp)
Overview 1 RT 1: 273-9604 bp Neighborhood of RT #1 [273, 10317] DEDDh RecQ UvrD UvrD UvrD RVT-UG2 Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 273-782 bp Feature: gene Location: 899-5746 bp Feature: domain Description: DEDDh Location: 1022-1250 bp Feature: domain Description: DEDDh Location: 102 2 -12 50 bp Feature: domain Description: RecQ Location: 1679-3095 bp Feature: domain Description: RecQ Location: 1679-3095 bp Feature: domain Description: UvrD Location: 4085-4364 bp Feature: domain Description: UvrD Location: 4085-4364 bp Feature: domain Description: UvrD Location: 4454-4967 bp Feature: domain Description: UvrD Location: 4454-4967 bp Feature: domain Description: UvrD Location: 5054-5372 bp Feature: domain Description: UvrD Location: 5054-5372 bp Feature: gene Location: 5830-7140 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6022-6850 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 602 2 -6850 bp Feature: gene Location: 7326-7463 bp Feature: gene Location: 7699-10317 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 8668-9604 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 8668-9604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDDh (cd06127), RecQ (COG0514), UvrD (COG0210), RVT-UG2, Peptidases_S8_Subtilisin_like_2 (cd04847)

Seq: KB902330.1 Desulfitobacterium hafniense PCP-1 genomic scaffold A37YDRAFT_scaffold_20.21, whole genome shotgun sequence (72992 bp)
Overview 1 RT 1: 409-3843 bp Neighborhood of RT #1 [409, 3848] PHA02517 RVT-GII PRK06153 Feature: gene Location: 409-1257 bp Feature: domain Description: PHA02517 Location: 463-1246 bp Feature: domain Description: PHA02517 Location: 463 -1246 bp Feature: gene Location: 1293-1499 bp Feature: gene Location: 1667-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922-2021 bp Feature: gene Location: 2084-2233 bp Feature: gene Location: 2682-3848 bp Feature: domain Description: PRK06153 Location: 2685-3843 bp Feature: domain Description: PRK06153 Location: 2685-3 843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK06153 (hypothetical protein; Provisional)