myRT

myRT report for GCA_000379565.1_ASM37956v1

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Seq: KB902891.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_133.134, whole genome shotgun sequence (7776 bp)
Overview 1 RT 1: 4273-7627 bp Neighborhood of RT #1 [4273, 7713] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like group_II_RT_mat RVT-GII GIIM Feature: gene Location: 4273-5190 bp Feature: domain Description: INT_RitB_C_like Location: 4576-5158 bp Feature: domain Description: INT_RitB_C_like Location: 4576-51 58 bp Feature: gene Location: 5187-6176 bp Feature: domain Description: Phage_int_SAM_1 Location: 5229-5475 bp Feature: domain Description: Phage_int_SAM_1 Location: 5229-5475 bp Feature: domain Description: INT_RitC_C_like Location: 5559-6096 bp Feature: domain Description: INT_RitC_C_like Location: 5559-6096 bp Feature: gene Location: 6352-7713 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6484-6697 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6484-6697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6700-7330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6700-7330 bp Feature: domain Description: GIIM Note: maturase Location: 7408-7627 bp Feature: domain Description: GIIM Note: maturase Location: 7408-7627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: KB902923.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_162.163, whole genome shotgun sequence (5944 bp)
Overview 1 RT 1: 476-5207 bp Neighborhood of RT #1 [476, 5281] RVT-Retrons Trypsin_2 Mrr_cat Feature: gene Location: 476-2848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 950-1565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 950-1565 bp Feature: domain Description: Trypsin_2 Location: 2033-2501 bp Feature: domain Description: Trypsin_2 Location: 2 033-2 501 bp Feature: gene Location: 3132-3377 bp Feature: gene Location: 3506-5281 bp Feature: domain Description: Mrr_cat Location: 4859-5207 bp Feature: domain Description: Mrr_cat Location: 4859-52 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), Mrr_cat (pfam04471)

Seq: KB902931.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_17.18, whole genome shotgun sequence (103028 bp)
Overview 1 RT 1: 197-2055 bp Neighborhood of RT #1 [197, 2234] RVT-GII GIIM HpaF HAD_SAK_2 Feature: gene Location: 197-1021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212-602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212-602 bp Feature: domain Description: GIIM Note: maturase Location: 653-857 bp Feature: domain Description: GIIM Note: maturase Location: 653 -857 bp Feature: gene Location: 1138-1551 bp Feature: domain Description: HpaF Location: 1180-1546 bp Feature: domain Description: HpaF Location: 1180-1546 bp Feature: gene Location: 1638-2234 bp Feature: domain Description: HAD_SAK_2 Location: 1653-2055 bp Feature: domain Description: HAD_SAK_2 Location: 1653 -2055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HpaF (COG3232), HAD_SAK_2 (pfam18143)

Seq: KB902944.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_181.182, whole genome shotgun sequence (4753 bp)
Overview 1 RT 1: 3-3356 bp Neighborhood of RT #1 [3, 3358] RVT-CRISPR-like GIIM Recombinase Zn_ribbon_recom COG4584 Feature: gene Location: 3-779 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9-405 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9-4 05 bp Feature: domain Description: GIIM Note: maturase Location: 465-675 bp Feature: domain Description: GIIM Note: maturase Location: 4 65-675 bp Feature: gene Location: 547-2604 bp Feature: domain Description: Recombinase Location: 1117-1456 bp Feature: domain Description: Recombinase Location: 1117-14 56 bp Feature: domain Description: Zn_ribbon_recom Location: 1519-1690 bp Feature: domain Description: Zn_ribbon_recom Location: 1519-1690 bp Feature: gene Location: 2615-3358 bp Feature: domain Description: COG4584 Location: 2690-3356 bp Feature: domain Description: COG4 584 Location: 2690-3356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), COG4584 (Transposase )

Seq: KB902952.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_189.190, whole genome shotgun sequence (4478 bp)
Overview 1 RT 1: 1-1046 bp Neighborhood of RT #1 [1, 1046] RVT-GII Feature: gene Location: 1-171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 -133 bp Feature: gene Location: 326-835 bp Feature: gene Location: 849-1046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KB902997.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_229.230, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 206-2167 bp Neighborhood of RT #1 [206, 2328] DLH RVT-GII GIIM Feature: gene Location: 206-517 bp Feature: gene Location: 483-1427 bp Feature: domain Description: DLH Location: 918-1422 bp Feature: domain Description: DLH Location: 918-1422 bp Feature: gene Location: 1792-2328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801-1894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801-1894 bp Feature: domain Description: GIIM Note: maturase Location: 1945-2167 bp Feature: domain Description: GIIM Note: maturase Location: 1945-216 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), RVT-GII, GIIM (pfam08388)

Seq: KB903001.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_232.233, whole genome shotgun sequence (2614 bp)
Overview 1 RT 1: 124-2530 bp Neighborhood of RT #1 [124, 2535] Prim_Zn_Ribbon RVT-GII Feature: gene Location: 124-1197 bp Feature: domain Description: Prim_Zn_Ribbon Location: 232-355 bp Feature: domain Description: Prim_Zn_Ribbon Location: 232-355 bp Feature: gene Location: 1298-1507 bp Feature: gene Location: 2053-2535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293-2530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293-2530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), RVT-GII

Seq: KB903140.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_358.359, whole genome shotgun sequence (1088 bp)
Overview 1 RT 1: 143-1002 bp Neighborhood of RT #1 [143, 1013] RVT-GII Feature: gene Location: 143-412 bp Feature: gene Location: 405-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 609-1002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KB903152.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_40.41, whole genome shotgun sequence (52756 bp)
Overview 1 RT 1: 1-3024 bp Neighborhood of RT #1 [1, 3035] HTH_17 RVT-GII Aes HU_like Feature: gene Location: 1-228 bp Feature: domain Description: HTH_17 Location: 73-187 bp Feature: domain Description: HTH_17 Location: 73-187 bp Feature: gene Location: 243-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-717 bp Feature: gene Location: 1418-2404 bp Feature: domain Description: Aes Location: 1511-2312 bp Feature: domain Description: Aes Location: 1511-2312 bp Feature: gene Location: 2577-3035 bp Feature: domain Description: HU_like Location: 2745-3024 bp Feature: domain Description: HU_like Location: 2745-3024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, Aes (COG0657), HU_like (cd13834)

Seq: KB903176.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_62.63, whole genome shotgun sequence (24164 bp)
Overview 1 RT 1: 7493-10691 bp Neighborhood of RT #1 [7493, 10691] DUF1484 RVT-Retrons Feature: gene Location: 7493-7711 bp Feature: gene Location: 7884-8213 bp Feature: domain Description: DUF1484 Location: 7899-8208 bp Feature: domain Description: DUF1484 Location: 7899-8208 bp Feature: gene Location: 8352-9536 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8505-9066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8505-9066 bp Feature: gene Location: 9569-9763 bp Feature: gene Location: 10332-10691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1484 (pfam07363), RVT-Retrons

Seq: KB903191.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_76.77, whole genome shotgun sequence (18684 bp)
Overview 1 RT 1: 16059-18578 bp Neighborhood of RT #1 [16059, 18682] YvrE Acetyltransf_1 Acetyltransf_18 RVT-CRISPR-like GIIM Feature: gene Location: 16059-16691 bp Feature: domain Description: YvrE Location: 16077-16671 bp Feature: domain Description: YvrE Location: 16077-16671 bp Feature: gene Location: 16830-17729 bp Feature: domain Description: Acetyltransf_1 Location: 16908-17229 bp Feature: domain Description: Acetyltransf_1 Location: 16908-17229 bp Feature: domain Description: Acetyltransf_18 Location: 17355-17607 bp Feature: domain Description: Acetyltransf_18 Location: 17355-17607 bp Feature: gene Location: 17906-18682 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 17912-18308 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 17912-18308 bp Feature: domain Description: GIIM Note: maturase Location: 18368-18578 bp Feature: domain Description: GIIM Note: maturase Location: 18368-18578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvrE (COG3386), Acetyltransf_1 (pfam00583), Acetyltransf_18 (pfam18014), RVT-CRISPR, GIIM (pfam08388)

Seq: KB903214.1 Cupriavidus sp. UYPR2.512 genomic scaffold A3A5DRAFT_scaffold_97.98, whole genome shotgun sequence (12218 bp)
Overview 1 RT 1: 9405-11828 bp Neighborhood of RT #1 [9405, 11998] PRTRC_D RVT-GII GIIM Feature: gene Location: 9405-10406 bp Feature: domain Description: PRTRC_D Location: 9426-10383 bp Feature: domain Description: PRTRC_D Location: 9426-10383 bp Feature: gene Location: 10418-10855 bp Feature: gene Location: 11162-11998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11177-11567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11177-11567 bp Feature: domain Description: GIIM Note: maturase Location: 11618-11828 bp Feature: domain Description: GIIM Note: maturase Location: 11618-11828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_D (TIGR03739), RVT-GII, GIIM (pfam08388)