myRT

myRT report for GCA_000380225.1_ASM38022v1

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Seq: KB904821.1 filamentous cyanobacterium ESFC-1 genomic scaffold A3MYDRAFT_scaffold1.1, whole genome shotgun sequence (5431811 bp)
Overview 1 RT 1: 1633001-1638591 bp 2 RT 2: 2301553-2305799 bp 3 RT 3: 3767722-3773395 bp 4 RT 4: 4118379-4125843 bp Neighborhood of RT #1 [1633001, 1638629] His_Phos_1 His_Phos_1 RVT_N RVT-GII GIIM McrA TMR_SDR_a Neighborhood of RT #2 [2301553, 2305799] DUF99 Uma2 RVT-Retrons Neighborhood of RT #3 [3767722, 3773397] COG4402 YadD RVT_N RVT-GII GIIM McrA DUF2887 Uma2 Neighborhood of RT #4 [4118379, 4125866] RVT-UG25 UvrD DEDDh UvrD PHP_HisPPase_AMP PHP_HisPPase_AMP Feature: gene Location: 1633001-1633774 bp Feature: gene Location: 1633777-1635108 bp Feature: domain Description: His_Phos_1 Location: 1633792-1634365 bp Feature: domain Description: His_Phos_1 Location: 1 633792-1 634365 bp Feature: domain Description: His_Phos_1 Location: 1634458-1635022 bp Feature: domain Description: His_Phos_1 Location: 1 634458-1 635022 bp Feature: gene Location: 1635224-1636984 bp Feature: domain Description: RVT_N Location: 1635287-1635533 bp Feature: domain Description: RVT_N Location: 1 635287-1 635533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635575-1636253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 635575-1 636253 bp Feature: domain Description: GIIM Note: maturase Location: 1636355-1636571 bp Feature: domain Description: GIIM Note: maturase Location: 1 636355-1 636571 bp Feature: domain Description: McrA Location: 1636646-1636940 bp Feature: domain Description: McrA Location: 1 636646-1 636940 bp Feature: gene Location: 1637333-1637497 bp Feature: gene Location: 1637790-1638629 bp Feature: domain Description: TMR_SDR_a Location: 1637805-1638591 bp Feature: domain Description: TMR_SDR_a Location: 1 637805-1 638591 bp Feature: gene Location: 2301553-2302167 bp Feature: domain Description: DUF99 Location: 2301592-2302138 bp Feature: domain Description: DUF99 Location: 2301 592-23021 38 bp Feature: gene Location: 2302332-2302970 bp Feature: domain Description: Uma2 Location: 2302386-2302827 bp Feature: domain Description: Uma2 Location: 2302386-2302827 bp Feature: gene Location: 2303123-2304754 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2303669-2304287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2303669-2304287 bp Feature: gene Location: 2304906-2305202 bp Feature: gene Location: 2305440-2305799 bp Feature: gene Location: 3767722-3769038 bp Feature: domain Description: COG4402 Location: 3767734-3769033 bp Feature: domain Description: COG4402 Location: 3767734-3769033 bp Feature: gene Location: 3769292-3769690 bp Feature: domain Description: YadD Location: 3769355-3769649 bp Feature: domain Description: YadD Location: 3769355-3769649 bp Feature: gene Location: 3769723-3771483 bp Feature: domain Description: RVT_N Location: 3769786-3770032 bp Feature: domain Description: RVT_N Location: 3769786-3770032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3770074-3770752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3770074-3770752 bp Feature: domain Description: GIIM Note: maturase Location: 3770854-3771070 bp Feature: domain Description: GIIM Note: maturase Location: 3770854-3771 070 bp Feature: domain Description: McrA Location: 3771166-3771439 bp Feature: domain Description: McrA Location: 3771 1 66-3771 439 bp Feature: gene Location: 3772103-3772621 bp Feature: domain Description: DUF2887 Location: 3772112-3772607 bp Feature: domain Description: DUF2887 Location: 37721 1 2-3772607 bp Feature: gene Location: 3772657-3773397 bp Feature: domain Description: Uma2 Location: 3772858-3773395 bp Feature: domain Description: Uma2 Location: 3772858-3773395 bp Feature: gene Location: 4118379-4118549 bp Feature: gene Location: 4118560-4118856 bp Feature: gene Location: 4119055-4122522 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 4120936-4121341 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 41 20936-41 21 341 bp Feature: gene Location: 4122534-4125011 bp Feature: domain Description: UvrD Location: 4122564-4123830 bp Feature: domain Description: UvrD Location: 41 22564-41 23830 bp Feature: domain Description: DEDDh Location: 4123938-4124403 bp Feature: domain Description: DEDDh Location: 41 23938-41 24403 bp Feature: domain Description: UvrD Location: 4124409-4124982 bp Feature: domain Description: UvrD Location: 41 24409-41 24982 bp Feature: gene Location: 4125159-4125866 bp Feature: domain Description: PHP_HisPPase_AMP Location: 4125276-4125564 bp Feature: domain Description: PHP_HisPPase_AMP Location: 41 25276-41 25564 bp Feature: domain Description: PHP_HisPPase_AMP Location: 4125585-4125843 bp Feature: domain Description: PHP_HisPPase_AMP Location: 41 25585-41 25843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT His_Phos_1 (pfam00300), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TMR_SDR_a (cd05269), DUF99 (pfam01949), Uma2 (pfam05685), RVT-Retrons, COG4402 (Uncharacterized protein )
YadD (COG5464), DUF2887 (pfam11103), RVT-UG25, UvrD (COG0210), DEDDh (cd06127), PHP_HisPPase_AMP (cd07438)