myRT

myRT report for GCA_000381205.1_ASM38120v1

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Seq: KB906174.1 Thioalkalivibrio sp. ALE11 genomic scaffold F620DRAFT_scaffold00011.11, whole genome shotgun sequence (80607 bp)
Overview 1 RT 1: 197-2062 bp Neighborhood of RT #1 [197, 2151] RVT-GII HTH_32 HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 197-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-629 bp Feature: gene Location: 1136-1663 bp Feature: domain Description: HTH_32 Location: 1247-1460 bp Feature: domain Description: HTH_32 Location: 1 247-1 460 bp Feature: gene Location: 1660-2151 bp Feature: domain Description: HTH_Tnp_1 Location: 1666-1822 bp Feature: domain Description: HTH_Tnp_1 Location: 1 666-1 822 bp Feature: domain Description: HTH_Tnp_1 Location: 1843-2062 bp Feature: domain Description: HTH_Tnp_1 Location: 1 843-2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527)

Seq: KB906184.1 Thioalkalivibrio sp. ALE11 genomic scaffold F620DRAFT_scaffold00021.21, whole genome shotgun sequence (19725 bp)
Overview 1 RT 1: 228-2626 bp Neighborhood of RT #1 [228, 2754] RVT-GII GIIM NERD COG3972 Feature: gene Location: 228-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 34-711 bp Feature: domain Description: GIIM Note: maturase Location: 786-1014 bp Feature: domain Description: GIIM Note: maturase Location: 786-1014 bp Feature: gene Location: 1282-1521 bp Feature: gene Location: 1732-2754 bp Feature: domain Description: NERD Location: 1783-2062 bp Feature: domain Description: NERD Location: 1783-2 062 bp Feature: domain Description: COG3972 Location: 2362-2626 bp Feature: domain Description: COG3972 Location: 2 362 -2 62 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NERD (pfam08378), COG3972 (Superfamily I DNA and RNA helicases )

Seq: KB906189.1 Thioalkalivibrio sp. ALE11 genomic scaffold F620DRAFT_scaffold00026.26, whole genome shotgun sequence (14128 bp)
Overview 1 RT 1: 1449-6974 bp Neighborhood of RT #1 [1449, 6979] IS5 group_II_RT_mat RVT-GII DUF772 GMP_PMI GMP_PMI Feature: gene Location: 1449-1886 bp Feature: domain Description: IS5 Location: 1452-1863 bp Feature: domain Description: IS5 Location: 1452-1863 bp Feature: gene Location: 1972-2460 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1981-2347 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1981-23 47 bp Feature: gene Location: 2451-3224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664-3219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664-3 219 bp Feature: gene Location: 3698-4258 bp Feature: domain Description: DUF772 Location: 3848-4070 bp Feature: domain Description: DUF772 Location: 3 848-4070 bp Feature: gene Location: 5390-6979 bp Feature: domain Description: GMP_PMI Location: 5408-5549 bp Feature: domain Description: GMP_PMI Location: 5408-5549 bp Feature: domain Description: GMP_PMI Location: 5741-6974 bp Feature: domain Description: GMP_PMI Location: 5741-6974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), group_II_RT_mat (TIGR04416), RVT-GII, DUF772 (pfam05598), GMP_PMI (TIGR01479)