myRT

myRT report for GCA_000381645.1_ASM38164v1

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Seq: KB906770.1 Teredinibacter turnerae T8402 genomic scaffold G008DRAFT_scaffold00002.2, whole genome shotgun sequence (472910 bp)
Overview 1 RT 1: 76489-80740 bp 2 RT 2: 403814-411692 bp Neighborhood of RT #1 [76489, 80778] RVT-UG2 HTH_XRE Neighborhood of RT #2 [403814, 411700] HsdM_N AE_Prim_S_like RVT-UG10 DUF45 gmk Feature: gene Location: 76489-76854 bp Feature: gene Location: 76851-77696 bp Feature: gene Location: 78235-79503 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 78424-79210 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 78424-7921 0 bp Feature: gene Location: 79580-80224 bp Feature: gene Location: 80530-80778 bp Feature: domain Description: HTH_XRE Location: 80575-80740 bp Feature: domain Description: HTH_XRE Location: 80575-80740 bp Feature: gene Location: 403814-404002 bp Feature: domain Description: HsdM_N Location: 403844-403976 bp Feature: domain Description: HsdM_N Location: 403844-403976 bp Feature: gene Location: 404002-404148 bp Feature: gene Location: 404711-410056 bp Feature: domain Description: AE_Prim_S_like Location: 404819-405077 bp Feature: domain Description: AE_Prim_S_like Location: 40481 9-405077 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 406046-406703 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 406046-406703 bp Feature: gene Location: 410166-410834 bp Feature: domain Description: DUF45 Location: 410193-410808 bp Feature: domain Description: DUF45 Location: 41 01 93-41 0808 bp Feature: gene Location: 411083-411700 bp Feature: domain Description: gmk Location: 411092-411692 bp Feature: domain Description: gmk Location: 41 1 092-41 1 692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, HTH_XRE (smart00530), HsdM_N (pfam12161), AE_Prim_S_like (cl01287), RVT-UG10, DUF45 (pfam01863), gmk (PRK14738)

Seq: KB906772.1 Teredinibacter turnerae T8402 genomic scaffold G008DRAFT_scaffold00004.4, whole genome shotgun sequence (402247 bp)
Overview 1 RT 1: 394191-400120 bp Neighborhood of RT #1 [394191, 400128] RVT-GII GIIM COG3547 Feature: gene Location: 394191-394322 bp Feature: gene Location: 394748-396637 bp Feature: gene Location: 397235-398554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397490-398156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397490-398156 bp Feature: domain Description: GIIM Note: maturase Location: 398255-398453 bp Feature: domain Description: GIIM Note: maturase Location: 3982 55-398453 bp Feature: gene Location: 398654-399124 bp Feature: gene Location: 399181-400128 bp Feature: domain Description: COG3547 Location: 399217-400120 bp Feature: domain Description: COG3547 Location: 3992 17-40012 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: KB906780.1 Teredinibacter turnerae T8402 genomic scaffold G008DRAFT_scaffold00012.12, whole genome shotgun sequence (192364 bp)
Overview 1 RT 1: 33789-39201 bp Neighborhood of RT #1 [33789, 39482] Cas10_III Cmr1 CRISPR_Cas6 RVT-CRISPR Feature: gene Location: 33789-35594 bp Feature: domain Description: Cas10_III Location: 33804-35208 bp Feature: domain Description: Cas10_III Location: 3 3 804-3 5208 bp Feature: gene Location: 35600-37015 bp Feature: domain Description: Cmr1 Location: 35690-36731 bp Feature: domain Description: Cmr1 Location: 3 5690-3 673 1 bp Feature: gene Location: 37461-39482 bp Feature: domain Description: CRISPR_Cas6 Location: 38025-38319 bp Feature: domain Description: CRISPR_Cas6 Location: 3 8025-3 83 19 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38652-39201 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 8652-3 9201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas10_III (cl21742), Cmr1 (COG1367), CRISPR_Cas6 (pfam10040), RVT-CRISPR

Seq: KB906781.1 Teredinibacter turnerae T8402 genomic scaffold G008DRAFT_scaffold00013.13, whole genome shotgun sequence (175556 bp)
Overview 1 RT 1: 170489-175554 bp Neighborhood of RT #1 [170489, 175554] HTH_ARSR RVT-UG3 RVT-UG8 Feature: gene Location: 170489-170818 bp Feature: domain Description: HTH_ARSR Location: 170525-170729 bp Feature: domain Description: HTH_ARSR Location: 170525-170729 bp Feature: gene Location: 171263-171562 bp Feature: gene Location: 171749-172984 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 172037-172526 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 172037-172526 bp Feature: gene Location: 172977-174929 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 173496-173931 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1734 96-173931 bp Feature: gene Location: 175106-175255 bp Feature: gene Location: 175327-175554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-UG3, RVT-UG8

Seq: KB906784.1 Teredinibacter turnerae T8402 genomic scaffold G008DRAFT_scaffold00016.16, whole genome shotgun sequence (128069 bp)
Overview 1 RT 1: 124642-127746 bp Neighborhood of RT #1 [124642, 127746] RVT-GII GIIM Feature: gene Location: 124642-125001 bp Feature: gene Location: 125664-126083 bp Feature: gene Location: 126192-127511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126447-127113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126447-127113 bp Feature: domain Description: GIIM Note: maturase Location: 127209-127410 bp Feature: domain Description: GIIM Note: maturase Location: 127209-127410 bp Feature: gene Location: 127489-127746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)