myRT

myRT report for GCA_000382445.1_Bact_mass_DSM_17679_V1

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Seq: KB905475.1 Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 genomic scaffold aczJl-supercont1.4, whole genome shotgun sequence (362245 bp)
Overview 1 RT 1: 320720-324880 bp Neighborhood of RT #1 [320720, 324939] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 320720-321823 bp Feature: domain Description: Bac_Flav_CT_J Location: 320741-321707 bp Feature: domain Description: Bac_Flav_CT_J Location: 320741 -321 707 bp Feature: gene Location: 321827-322363 bp Feature: gene Location: 322356-324191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322650-323472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322650-323472 bp Feature: domain Description: Intron_maturas2 Location: 323631-324000 bp Feature: domain Description: Intron_maturas2 Location: 323631 -324000 bp Feature: domain Description: HNHc Note: nucleases Location: 324024-324165 bp Feature: domain Description: HNHc Note: nucleases Location: 324024-3241 65 bp Feature: gene Location: 324593-324733 bp Feature: gene Location: 324712-324939 bp Feature: domain Description: DUF4141 Location: 324724-324880 bp Feature: domain Description: DUF41 41 Location: 324724-324880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: KB905474.1 Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 genomic scaffold aczJl-supercont1.3, whole genome shotgun sequence (452358 bp)
Overview 1 RT 1: 133006-138328 bp 2 RT 2: 248633-252822 bp Neighborhood of RT #1 [133006, 142449] RVT-DGRs Laminin_G_3 Laminin_G_3 Neighborhood of RT #2 [248633, 252822] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc Feature: gene Location: 133006-133248 bp Feature: gene Location: 133428-133913 bp Feature: gene Location: 133910-135214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134120-134798 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13412 0-134798 bp Feature: gene Location: 135593-135733 bp Feature: gene Location: 135730-142449 bp Feature: domain Description: Laminin_G_3 Location: 137173-137251 bp Feature: domain Description: Laminin_G_3 Location: 137173-1372 51 bp Feature: domain Description: Laminin_G_3 Location: 137902-138328 bp Feature: domain Description: Laminin_G_3 Location: 137902 -13832 8 bp Feature: gene Location: 248633-249637 bp Feature: domain Description: Bac_Flav_CT_J Location: 248639-249608 bp Feature: domain Description: Bac_Flav_CT_J Location: 2 48639-2 49608 bp Feature: gene Location: 249641-250177 bp Feature: gene Location: 250170-252005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250464-251286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50464-2 512 86 bp Feature: domain Description: Intron_maturas2 Location: 251445-251814 bp Feature: domain Description: Intron_maturas2 Location: 2 51445-2 51814 bp Feature: domain Description: HNHc Note: nucleases Location: 251838-251979 bp Feature: domain Description: HNHc Note: nucleases Location: 2 51838-2 51979 bp Feature: gene Location: 252407-252547 bp Feature: gene Location: 252505-252822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KB905472.1 Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 genomic scaffold aczJl-supercont1.1, whole genome shotgun sequence (3116102 bp)
Overview 1 RT 1: 1296758-1299883 bp 2 RT 2: 2259901-2265530 bp Neighborhood of RT #1 [1296758, 1299915] RVT-DGRs HTH_XRE Gp49 Neighborhood of RT #2 [2259901, 2265530] Dam RVT-DGRs Feature: gene Location: 1296758-1297126 bp Feature: gene Location: 1297238-1297450 bp Feature: gene Location: 1297518-1299008 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1297905-1298595 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1297905-1298595 bp Feature: gene Location: 1299255-1299566 bp Feature: domain Description: HTH_XRE Location: 1299369-1299522 bp Feature: domain Description: HTH_XRE Location: 12993 69-1299522 bp Feature: gene Location: 1299571-1299915 bp Feature: domain Description: Gp49 Location: 1299625-1299883 bp Feature: domain Description: Gp49 Location: 1299625-1299883 bp Feature: gene Location: 2259901-2260743 bp Feature: domain Description: Dam Location: 2259904-2260672 bp Feature: domain Description: Dam Location: 2259904-2260672 bp Feature: gene Location: 2260925-2261335 bp Feature: gene Location: 2261349-2262692 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2261556-2262216 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2261556-2262216 bp Feature: gene Location: 2263181-2264617 bp Feature: gene Location: 2264631-2265530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973), Dam (pfam05869)