myRT

myRT report for GCA_000384195.1_ASM38419v1

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Seq: KB913034.1 Allobaculum stercoricanis DSM 13633 genomic scaffold AllstDRAFT_scaffold1.1, whole genome shotgun sequence (2052877 bp)
Overview 1 RT 1: 806864-812124 bp 2 RT 2: 1012618-1018685 bp 3 RT 3: 1054809-1059133 bp 4 RT 4: 1158212-1162311 bp 5 RT 5: 1191349-1195896 bp 6 RT 6: 1607330-1612733 bp Neighborhood of RT #1 [806864, 812246] RpoE RVT-GII RVT-GII GIIM COG3547 arc_metj MobC Neighborhood of RT #2 [1012618, 1018906] dnaG PRK04173 RVT-GII GIIM PP2C_2 Neighborhood of RT #3 [1054809, 1059144] RVT-GII GIIM cztS_silS_copS BaeS OmpR Neighborhood of RT #4 [1158212, 1162311] YgiN RVT-GII GIIM Neighborhood of RT #5 [1191349, 1195919] Hydrolase_3 Hydrolase_3 PP2C_2 RVT-GII GIIM DUF2871 Neighborhood of RT #6 [1607330, 1612846] recQ RVT-GII GIIM ECF_trnsprt Udk Feature: gene Location: 806864-807286 bp Feature: domain Description: RpoE Location: 806915-807269 bp Feature: domain Description: RpoE Location: 80691 5-807269 bp Feature: gene Location: 807486-807884 bp Feature: gene Location: 808108-808614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808309-808612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808309-80861 2 bp Feature: gene Location: 808633-809412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808639-808927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808639-808927 bp Feature: domain Description: GIIM Note: maturase Location: 808981-809191 bp Feature: domain Description: GIIM Note: maturase Location: 808981 -8091 91 bp Feature: gene Location: 810139-811350 bp Feature: domain Description: COG3547 Location: 810313-811147 bp Feature: domain Description: COG3547 Location: 81 031 3-81 1 1 47 bp Feature: gene Location: 811512-812246 bp Feature: domain Description: arc_metj Location: 811887-812001 bp Feature: domain Description: arc_metj Location: 81 1 887-81 2001 bp Feature: domain Description: MobC Location: 812073-812124 bp Feature: domain Description: MobC Location: 81 2073-81 21 24 bp Feature: gene Location: 1012618-1014354 bp Feature: domain Description: dnaG Location: 1012621-1014286 bp Feature: domain Description: dnaG Location: 1 01 2621 -1 01 4286 bp Feature: gene Location: 1014541-1016052 bp Feature: domain Description: PRK04173 Location: 1014685-1016038 bp Feature: domain Description: PRK041 73 Location: 1 01 4685-1 01 6038 bp Feature: gene Location: 1016229-1017533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016430-1017048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 6430-1 01 7048 bp Feature: domain Description: GIIM Note: maturase Location: 1017102-1017312 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 71 02-1 01 731 2 bp Feature: gene Location: 1017532-1017681 bp Feature: gene Location: 1018118-1018906 bp Feature: domain Description: PP2C_2 Location: 1018145-1018685 bp Feature: domain Description: PP2C_2 Location: 1 01 81 45-1 01 8685 bp Feature: gene Location: 1054809-1054946 bp Feature: gene Location: 1055224-1055373 bp Feature: gene Location: 1055372-1056676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055573-1056191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 055573-1 0561 91 bp Feature: domain Description: GIIM Note: maturase Location: 1056245-1056455 bp Feature: domain Description: GIIM Note: maturase Location: 1 056245-1 056455 bp Feature: gene Location: 1056780-1058444 bp Feature: domain Description: cztS_silS_copS Location: 1056852-1057500 bp Feature: domain Description: cztS_silS_copS Location: 1 056852-1 057500 bp Feature: domain Description: BaeS Location: 1057737-1058433 bp Feature: domain Description: BaeS Location: 1 057737-1 058433 bp Feature: gene Location: 1058437-1059144 bp Feature: domain Description: OmpR Location: 1058455-1059133 bp Feature: domain Description: OmpR Location: 1 058455-1 0591 33 bp Feature: gene Location: 1158212-1158346 bp Feature: gene Location: 1158512-1158844 bp Feature: domain Description: YgiN Location: 1158524-1158788 bp Feature: domain Description: YgiN Location: 1 1 58524-1 1 58788 bp Feature: gene Location: 1158935-1160239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159136-1159754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 591 36-1 1 59754 bp Feature: domain Description: GIIM Note: maturase Location: 1159808-1160018 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 59808-1 1 6001 8 bp Feature: gene Location: 1160238-1160378 bp Feature: gene Location: 1160860-1162311 bp Feature: gene Location: 1191349-1192560 bp Feature: domain Description: Hydrolase_3 Location: 1191394-1191868 bp Feature: domain Description: Hydrolase_3 Location: 1 1 91 394-1 1 91 868 bp Feature: domain Description: Hydrolase_3 Location: 1192078-1192492 bp Feature: domain Description: Hydrolase_3 Location: 1 1 92078-1 1 92492 bp Feature: gene Location: 1192523-1193425 bp Feature: domain Description: PP2C_2 Location: 1192622-1192973 bp Feature: domain Description: PP2C_2 Location: 1 1 92622-1 1 92973 bp Feature: gene Location: 1193511-1194815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193712-1194330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9371 2-1 1 94330 bp Feature: domain Description: GIIM Note: maturase Location: 1194384-1194594 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94384-1 1 94594 bp Feature: gene Location: 1194814-1194954 bp Feature: gene Location: 1195497-1195919 bp Feature: domain Description: DUF2871 Location: 1195500-1195896 bp Feature: domain Description: DUF2871 Location: 1 1 95500-1 1 95896 bp Feature: gene Location: 1607330-1609564 bp Feature: domain Description: recQ Location: 1607372-1609220 bp Feature: domain Description: recQ Location: 1 607372-1 609220 bp Feature: gene Location: 1609999-1610139 bp Feature: gene Location: 1610138-1611442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610339-1610957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 0339-1 61 0957 bp Feature: domain Description: GIIM Note: maturase Location: 1611011-1611221 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 1 01 1 -1 61 1 221 bp Feature: gene Location: 1611495-1612241 bp Feature: domain Description: ECF_trnsprt Location: 1611717-1612188 bp Feature: domain Description: ECF_trnsprt Location: 1 61 1 71 7-1 61 21 88 bp Feature: gene Location: 1612274-1612846 bp Feature: domain Description: Udk Location: 1612328-1612733 bp Feature: domain Description: Udk Location: 1 61 2328-1 61 2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), arc_metj (LOAD_arc_metj), MobC (pfam05713), dnaG (TIGR01391), PRK04173 (glycyl-tRNA synthetase; Provisional), PP2C_2 (pfam13672), cztS_silS_copS (TIGR01386)
BaeS (COG0642), OmpR (COG0745), YgiN (COG1359), Hydrolase_3 (pfam08282), DUF2871 (pfam11070), recQ (TIGR01389), ECF_trnsprt (pfam12822), Udk (COG0572)