myRT

myRT report for GCA_000387825.2_ASM38782v2

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Seq: APNU01000043.1 Escherichia coli HM27 HM27_43, whole genome shotgun sequence (21489 bp)
Overview 1 RT 1: 15885-19989 bp Neighborhood of RT #1 [15885, 20003] InsG Transposase_20 RVT-GII GIIM rve_2 Feature: gene Location: 15885-16037 bp Feature: gene Location: 16064-17455 bp Feature: domain Description: InsG Location: 16067-16988 bp Feature: domain Description: InsG Location: 1 6067-1 6988 bp Feature: domain Description: Transposase_20 Location: 17111-17357 bp Feature: domain Description: Transposase_20 Location: 1 71 1 1 -1 7357 bp Feature: gene Location: 17842-19230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18172-18790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 72-1 8790 bp Feature: domain Description: GIIM Note: maturase Location: 18838-19069 bp Feature: domain Description: GIIM Note: maturase Location: 1 8838-1 9069 bp Feature: gene Location: 19458-19775 bp Feature: gene Location: 19851-20003 bp Feature: domain Description: rve_2 Location: 19881-19989 bp Feature: domain Description: rve_2 Location: 1 9881 -1 9989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333)

Seq: APNU01000057.1 Escherichia coli HM27 HM27_57, whole genome shotgun sequence (27520 bp)
Overview 1 RT 1: 18018-21098 bp Neighborhood of RT #1 [18018, 21098] COG3547 COG3547 RVT-GII Feature: gene Location: 18018-18566 bp Feature: domain Description: COG3547 Location: 18030-18516 bp Feature: domain Description: COG3547 Location: 18030-18516 bp Feature: gene Location: 18625-19020 bp Feature: domain Description: COG3547 Location: 18643-18934 bp Feature: domain Description: COG3547 Location: 18643-18934 bp Feature: gene Location: 19259-20716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19667-20354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19667-2 0354 bp Feature: gene Location: 20750-20890 bp Feature: gene Location: 20898-21098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: APNU01000096.1 Escherichia coli HM27 HM27_96, whole genome shotgun sequence (8099 bp)
Overview 1 RT 1: 2-7950 bp Neighborhood of RT #1 [2, 7973] FHA_bHelix FHA_bHelix RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2-775 bp Feature: domain Description: FHA_bHelix Location: 35-431 bp Feature: domain Description: FHA_bHelix Location: 3 5-43 1 bp Feature: domain Description: FHA_bHelix Location: 638-749 bp Feature: domain Description: FHA_bHelix Location: 63 8-749 bp Feature: gene Location: 1386-2198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1659-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1659-2115 bp Feature: gene Location: 2214-2588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2220-2391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2220-23 91 bp Feature: gene Location: 2595-3011 bp Feature: gene Location: 3073-3231 bp Feature: domain Description: PHA02517 Location: 3076-3178 bp Feature: domain Description: PHA02517 Location: 3 076-3 178 bp Feature: gene Location: 4587-5663 bp Feature: domain Description: COG3436 Location: 4899-5370 bp Feature: domain Description: COG3 43 6 Location: 4899-53 70 bp Feature: gene Location: 5639-6028 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5744-5987 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5744-5987 bp Feature: gene Location: 6480-7190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6681-7182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6681-7182 bp Feature: gene Location: 7339-7710 bp Feature: domain Description: GIIM Note: maturase Location: 7411-7633 bp Feature: domain Description: GIIM Note: maturase Location: 7411-763 3 bp Feature: gene Location: 7827-7973 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7839-7950 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 783 9-7950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FHA_bHelix (sd00046), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)