myRT

myRT report for GCA_000389595.1_XENF1_2627_PRJEB1529

Download annotations/find similar RTs

Seq: HF952044.1 Xenorhabdus nematophila F1 genomic scaffold, XENF1_2627_scaffold3, whole genome shotgun sequence (512174 bp)
Overview 1 RT 1: 100293-104599 bp Neighborhood of RT #1 [100293, 104601] DDE_Tnp_1_3 RVT-Retrons COG3440 potD Feature: gene Location: 100293-100400 bp Feature: gene Location: 101127-101585 bp Ori: CCW32812.1 Feature: domain Description: DDE_Tnp_1_3 Location: 101130-101475 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 01 1 30-1 01 475 bp Feature: gene Location: 101707-102207 bp Ori: CCW32813.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101809-102109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 809-1 021 09 bp Feature: gene Location: 102613-103485 bp Ori: CCW32814.1 Feature: domain Description: COG3440 Location: 102628-103477 bp Feature: domain Description: COG3440 Location: 1 02628-1 03477 bp Feature: gene Location: 103537-104601 bp Ori: CCW32815.1 Gene: potD Feature: domain Description: potD Location: 103552-104599 bp Feature: domain Description: potD Location: 1 03552-1 04599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-Retrons, COG3440 (Predicted restriction endonuclease ), potD (PRK09501)

Seq: HF952049.1 Xenorhabdus nematophila F1 genomic scaffold, XENF1_2627_scaffold8, whole genome shotgun sequence (187649 bp)
Overview 1 RT 1: 17219-21554 bp Neighborhood of RT #1 [17219, 21586] RVT-AbiP2 BeeE Feature: gene Location: 17219-17362 bp Feature: gene Location: 17395-18099 bp Feature: gene Location: 18431-19141 bp Ori: CCW30535.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18848-19121 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18848-1912 1 bp Feature: gene Location: 19308-19748 bp Feature: gene Location: 21122-21586 bp Ori: CCW30561.1 Feature: domain Description: BeeE Location: 21125-21554 bp Feature: domain Description: BeeE Location: 2 112 5-2 1554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, BeeE (COG4695)

Seq: HF952048.1 Xenorhabdus nematophila F1 genomic scaffold, XENF1_2627_scaffold7, whole genome shotgun sequence (194270 bp)
Overview 1 RT 1: 273-8731 bp Neighborhood of RT #1 [273, 8739] PRK12735 RVT-GII RVT-GII Recombinase Zn_ribbon_recom Resolvase RVT-CRISPR-like2 RVT-GII GIIM RVT-GII GIIM PRK10635 rpsJ Feature: gene Location: 273-1184 bp Ori: CCW30261.1 Feature: domain Description: PRK12735 Location: 276-1179 bp Feature: domain Description: PRK1273 5 Location: 276-1179 bp Feature: gene Location: 1676-2083 bp Feature: gene Location: 2001-2114 bp Ori: CCW30263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2112 bp Feature: gene Location: 2204-2377 bp Ori: CCW30264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2207-2342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2207-23 42 bp Feature: gene Location: 2240-2665 bp Feature: gene Location: 2658-3491 bp Ori: CCW30266.1 Feature: domain Description: Recombinase Location: 2694-3060 bp Feature: domain Description: Recombinase Location: 2694-3 060 bp Feature: domain Description: Zn_ribbon_recom Location: 3105-3288 bp Feature: domain Description: Zn_ribbon_recom Location: 3 105-3 288 bp Feature: gene Location: 3742-3990 bp Ori: CCW30269.1 Feature: domain Description: Resolvase Location: 3754-3934 bp Feature: domain Description: Resolvase Location: 3 754-3 93 4 bp Feature: gene Location: 4134-4466 bp Feature: gene Location: 4564-4689 bp Ori: CCW30271.1 Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 4567-4663 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 4567-4663 bp Feature: gene Location: 5067-6476 bp Ori: CCW30272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5421-6078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5421-6078 bp Feature: domain Description: GIIM Note: maturase Location: 6159-6378 bp Feature: domain Description: GIIM Note: maturase Location: 6159-63 78 bp Feature: gene Location: 6473-7165 bp Ori: CCW30273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6548-6686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6548-6686 bp Feature: domain Description: GIIM Note: maturase Location: 6734-6959 bp Feature: domain Description: GIIM Note: maturase Location: 673 4-6959 bp Feature: gene Location: 7639-8115 bp Ori: CCW30274.1 Gene: bfr Feature: domain Description: PRK10635 Location: 7642-8110 bp Feature: domain Description: PRK1063 5 Location: 7642-8110 bp Feature: gene Location: 8428-8739 bp Ori: CCW30275.1 Gene: rpsJ Feature: domain Description: rpsJ Location: 8431-8731 bp Feature: domain Description: rpsJ Location: 843 1-873 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12735 (elongation factor Tu; Reviewed), RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Resolvase (smart00857), RVT-CRISPR, GIIM (pfam08388), PRK10635 (bacterioferritin; Provisional), rpsJ (PRK00596)

Seq: HF952079.1 Xenorhabdus nematophila F1 genomic scaffold, XENF1_2627_scaffold38, whole genome shotgun sequence (971 bp)
Overview 1 RT 1: 252-783 bp Neighborhood of RT #1 [252, 800] RVT-GII Feature: gene Location: 252-800 bp Ori: CCW32074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: HF952042.1 Xenorhabdus nematophila F1 genomic scaffold, XENF1_2627_scaffold1, whole genome shotgun sequence (640053 bp)
Overview 1 RT 1: 16409-21809 bp Neighborhood of RT #1 [16409, 21814] RVT_N RVT-GII GIIM HNHc dxs PRK10581 Feature: gene Location: 16409-16552 bp Feature: gene Location: 17089-17319 bp Ori: CCW32205.1 Feature: domain Description: RVT_N Location: 17146-17245 bp Feature: domain Description: RVT_N Location: 17146-17245 bp Feature: gene Location: 17201-18634 bp Ori: CCW32206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17303-17939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17303-17939 bp Feature: domain Description: GIIM Note: maturase Location: 17990-18224 bp Feature: domain Description: GIIM Note: maturase Location: 17990-18224 bp Feature: domain Description: HNHc Note: nucleases Location: 18446-18599 bp Feature: domain Description: HNHc Note: nucleases Location: 18446-185 99 bp Feature: gene Location: 18828-20693 bp Ori: CCW32207.1 Gene: dxs Feature: domain Description: dxs Location: 18864-20688 bp Feature: domain Description: dxs Location: 18864-20688 bp Feature: gene Location: 20897-21814 bp Ori: CCW32208.1 Gene: ispA Feature: domain Description: PRK10581 Location: 20924-21809 bp Feature: domain Description: PRK105 81 Location: 20924-21809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), dxs (TIGR00204), PRK10581 ((2E,6E)-farnesyl diphosphate synthase)