myRT

myRT report for GCA_000390145.1_Whole_genome_shotgun_assembly

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Seq: ASAI01000001.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (231518 bp)
Overview 1 RT 1: 190804-194514 bp Neighborhood of RT #1 [190804, 194552] PRK00971 GIIM RVT-GII PRK11212 Feature: gene Location: 190804-191724 bp Feature: domain Description: PRK00971 Location: 190816-191722 bp Feature: domain Description: PRK00971 Location: 1 9081 6-1 91 722 bp Feature: gene Location: 191821-192330 bp Feature: domain Description: GIIM Note: maturase Location: 191926-192151 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 926-1 921 51 bp Feature: gene Location: 192419-193171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192698-193046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92698-1 93046 bp Feature: gene Location: 193342-193497 bp Feature: gene Location: 193884-194552 bp Feature: domain Description: PRK11212 Location: 193887-194514 bp Feature: domain Description: PRK1 1 21 2 Location: 1 93887-1 9451 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00971 (glutaminase; Provisional), GIIM (pfam08388), RVT-GII, PRK11212 (7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter)

Seq: ASAI01000003.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (192650 bp)
Overview 1 RT 1: 179078-184114 bp Neighborhood of RT #1 [179078, 184842] DDE_Tnp_1_assoc YhhI YhhI RVT-GII GIIM ECA_wecA rve Feature: gene Location: 179078-179371 bp Feature: gene Location: 179511-180638 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 179538-179796 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 179538-179796 bp Feature: domain Description: YhhI Location: 179937-180237 bp Feature: domain Description: YhhI Location: 179937-1802 37 bp Feature: domain Description: YhhI Location: 180291-180564 bp Feature: domain Description: YhhI Location: 1802 91-180564 bp Feature: gene Location: 180884-182209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181163-181820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181163-18182 0 bp Feature: domain Description: GIIM Note: maturase Location: 181901-182117 bp Feature: domain Description: GIIM Note: maturase Location: 181901-182 117 bp Feature: gene Location: 182653-183285 bp Feature: domain Description: ECA_wecA Location: 182713-183256 bp Feature: domain Description: ECA_wecA Location: 182 713-1832 56 bp Feature: gene Location: 183349-184842 bp Feature: domain Description: rve Location: 183739-184114 bp Feature: domain Description: rve Location: 183739-184114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), RVT-GII, GIIM (pfam08388), ECA_wecA (TIGR02380), rve (pfam00665)

Seq: ASAI01000005.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (182438 bp)
Overview 1 RT 1: 48181-51577 bp Neighborhood of RT #1 [48181, 51577] ElbB GIIM RVT-GII Feature: gene Location: 48181-48831 bp Feature: domain Description: ElbB Location: 48184-48829 bp Feature: domain Description: ElbB Location: 48184-48829 bp Feature: gene Location: 49513-50022 bp Feature: domain Description: GIIM Note: maturase Location: 49618-49843 bp Feature: domain Description: GIIM Note: maturase Location: 49618-49843 bp Feature: gene Location: 50111-50863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50390-50852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503 90-50852 bp Feature: gene Location: 51034-51189 bp Feature: gene Location: 51398-51577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ElbB (COG3155), GIIM (pfam08388), RVT-GII

Seq: ASAI01000006.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (170394 bp)
Overview 1 RT 1: 35383-39144 bp Neighborhood of RT #1 [35383, 39144] glmU RVT-GII group_II_RT_mat Feature: gene Location: 35383-35655 bp Feature: gene Location: 35934-37292 bp Feature: domain Description: glmU Location: 35940-37290 bp Feature: domain Description: glmU Location: 3594 0-37290 bp Feature: gene Location: 37930-38592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37984-38479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37984 -384 79 bp Feature: gene Location: 38516-38818 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38627-38774 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38627-38774 bp Feature: gene Location: 38989-39144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glmU (TIGR01173), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: ASAI01000014.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (104473 bp)
Overview 1 RT 1: 63023-66452 bp Neighborhood of RT #1 [63023, 66452] ArgO PRK10334 RVT-GII GIIM group_II_RT_mat Feature: gene Location: 63023-63661 bp Feature: domain Description: ArgO Location: 63041-63632 bp Feature: domain Description: ArgO Location: 63041-63632 bp Feature: gene Location: 63739-64596 bp Feature: domain Description: PRK10334 Location: 63751-64585 bp Feature: domain Description: PRK10334 Location: 6375 1-645 85 bp Feature: gene Location: 64776-65900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64830-65451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64830-65 45 1 bp Feature: domain Description: GIIM Note: maturase Location: 65496-65721 bp Feature: domain Description: GIIM Note: maturase Location: 65 496-65 721 bp Feature: gene Location: 65824-66126 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 65935-66082 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 65 935 -66082 bp Feature: gene Location: 66297-66452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArgO (COG1279), PRK10334 (small-conductance mechanosensitive channel MscS), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: ASAI01000019.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (80292 bp)
Overview 1 RT 1: 13034-18357 bp Neighborhood of RT #1 [13034, 18422] YhhI DDE_Tnp_1_assoc YhhI RVT-GII GIIM DDE_Tnp_IS66_C SrmB Feature: gene Location: 13034-13240 bp Feature: domain Description: YhhI Location: 13040-13166 bp Feature: domain Description: YhhI Location: 13040-1316 6 bp Feature: gene Location: 13272-14162 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 13299-13557 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 13299-13557 bp Feature: domain Description: YhhI Location: 13698-13983 bp Feature: domain Description: YhhI Location: 136 98-13983 bp Feature: gene Location: 14408-15733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14687-15344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146 87-15344 bp Feature: domain Description: GIIM Note: maturase Location: 15425-15641 bp Feature: domain Description: GIIM Note: maturase Location: 15425-156 41 bp Feature: gene Location: 16251-16505 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16359-16473 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 16 359-16 473 bp Feature: gene Location: 17055-18422 bp Feature: domain Description: SrmB Location: 17106-18357 bp Feature: domain Description: SrmB Location: 17106 -18357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), SrmB (COG0513)

Seq: ASAI01000027.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (60057 bp)
Overview 1 RT 1: 55224-59857 bp Neighborhood of RT #1 [55224, 59874] rve ECA_wecA RVT-GII GIIM DDE_Tnp_1_assoc YhhI Feature: gene Location: 55224-56183 bp Feature: domain Description: rve Location: 55614-55989 bp Feature: domain Description: rve Location: 55614-55989 bp Feature: gene Location: 56247-56624 bp Feature: domain Description: ECA_wecA Location: 56253-56595 bp Feature: domain Description: ECA_wecA Location: 56253-56595 bp Feature: gene Location: 57330-58655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57609-58266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57 609-58266 bp Feature: domain Description: GIIM Note: maturase Location: 58347-58563 bp Feature: domain Description: GIIM Note: maturase Location: 58347 -58563 bp Feature: gene Location: 58901-59365 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 58928-59186 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 58928-59186 bp Feature: gene Location: 59521-59874 bp Feature: domain Description: YhhI Location: 59683-59857 bp Feature: domain Description: YhhI Location: 59683-59857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), ECA_wecA (TIGR02380), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)

Seq: ASAI01000036.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (46157 bp)
Overview 1 RT 1: 738-6284 bp Neighborhood of RT #1 [738, 6298] emrE RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 738-1070 bp Feature: domain Description: emrE Location: 741-1068 bp Feature: domain Description: emrE Location: 741-1068 bp Feature: gene Location: 1418-1798 bp Feature: gene Location: 1795-3558 bp Feature: RT Description: RVT_N Location: 1867-2110 bp Feature: RT Description: RVT_N Location: 18 67-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155-2800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155-28 00 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3085 bp Feature: domain Description: GIIM Note: maturase Location: 28 51-308 5 bp Feature: domain Description: HNHc Note: nucleases Location: 3301-3463 bp Feature: domain Description: HNHc Note: nucleases Location: 3301-3463 bp Feature: gene Location: 3717-3989 bp Feature: gene Location: 4652-6298 bp Feature: domain Description: groEL Location: 4658-6284 bp Feature: domain Description: groEL Location: 4658 -628 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), emrE (PRK09541)

Seq: ASAI01000041.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (41130 bp)
Overview 1 RT 1: 27-6606 bp Neighborhood of RT #1 [27, 6617] RVT-GII GIIM Tar PLN00094 Feature: gene Location: 27-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-9 27 bp Feature: domain Description: GIIM Note: maturase Location: 975-1194 bp Feature: domain Description: GIIM Note: maturase Location: 9 75-119 4 bp Feature: gene Location: 1531-3444 bp Feature: domain Description: Tar Location: 2305-3442 bp Feature: domain Description: Tar Location: 2305-3442 bp Feature: gene Location: 4020-6617 bp Feature: domain Description: PLN00094 Location: 4026-6606 bp Feature: domain Description: PLN0009 4 Location: 4026-6606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), RVT-GII, GIIM (pfam08388)

Seq: ASAI01000067.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651, whole genome shotgun sequence (18096 bp)
Overview 1 RT 1: 8671-17775 bp Neighborhood of RT #1 [8671, 17775] YhhI DDE_Tnp_1_assoc YhhI RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C PRK09183 DDE_Tnp_1_5 RVT-GII GIIM Feature: gene Location: 8671-9210 bp Feature: domain Description: YhhI Location: 8887-9160 bp Feature: domain Description: YhhI Location: 8887-9160 bp Feature: gene Location: 9170-9775 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 9197-9455 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 9197-9455 bp Feature: domain Description: YhhI Location: 9596-9764 bp Feature: domain Description: YhhI Location: 9596-9764 bp Feature: gene Location: 10021-11346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10300-10957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 300-10 957 bp Feature: domain Description: GIIM Note: maturase Location: 11038-11254 bp Feature: domain Description: GIIM Note: maturase Location: 110 38-11254 bp Feature: gene Location: 11790-12113 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11853-11946 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11853-11946 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11967-12081 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11967-12081 bp Feature: gene Location: 12391-13191 bp Feature: domain Description: PRK09183 Location: 12394-13159 bp Feature: domain Description: PRK09183 Location: 12394-13159 bp Feature: gene Location: 14593-15513 bp Feature: domain Description: DDE_Tnp_1_5 Location: 14653-14986 bp Feature: domain Description: DDE_Tnp_1_5 Location: 14653-14986 bp Feature: gene Location: 15574-15723 bp Feature: gene Location: 16061-17365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16349-16991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16349-16991 bp Feature: domain Description: GIIM Note: maturase Location: 17063-17270 bp Feature: domain Description: GIIM Note: maturase Location: 17063-17270 bp Feature: gene Location: 17566-17775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK09183 (transposase/IS protein; Provisional), YhhI (COG5433), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1_5 (pfam13737)