myRT

myRT report for GCA_000394635.1_Ente_faec_Efm_NY1-1_V1

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Seq: KB946881.1 Enterococcus faecium EnGen0314 genomic scaffold acEQN-supercont1.1, whole genome shotgun sequence (506585 bp)
Overview 1 RT 1: 270493-287798 bp 2 RT 2: 432388-439219 bp Neighborhood of RT #1 [270493, 287798] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [432388, 439227] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 270493-270876 bp Ori: EOI65206.1 Feature: domain Description: DUF961 Location: 270508-270808 bp Feature: domain Description: DUF961 Location: 270508-270808 bp Feature: gene Location: 270905-272050 bp Ori: EOI65207.1 Feature: domain Description: FtsK Location: 271514-272030 bp Feature: domain Description: FtsK Location: 271 51 4-272030 bp Feature: gene Location: 272765-274624 bp Ori: EOI65208.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273074-273815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273074-27381 5 bp Feature: domain Description: HNHc Note: nucleases Location: 274370-274508 bp Feature: domain Description: HNHc Note: nucleases Location: 274370-274508 bp Feature: gene Location: 274718-275002 bp Feature: gene Location: 275181-276386 bp Ori: EOI65210.1 Feature: domain Description: HTH_XRE Location: 275226-275370 bp Feature: domain Description: HTH_XRE Location: 275226-275370 bp Feature: domain Description: Rol_Rep_N Location: 275397-275664 bp Feature: domain Description: Rol_Rep_N Location: 275397-275664 bp Feature: domain Description: Rep_trans Location: 275688-276297 bp Feature: domain Description: Rep_trans Location: 275688-276297 bp Feature: gene Location: 277170-279080 bp Ori: EOI65211.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277503-278241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277503-278241 bp Feature: domain Description: HNHc Note: nucleases Location: 278796-278961 bp Feature: domain Description: HNHc Note: nucleases Location: 278796-278961 bp Feature: gene Location: 279525-280022 bp Ori: EOI65212.1 Feature: domain Description: ArdA Location: 279543-280008 bp Feature: domain Description: ArdA Location: 279543-280008 bp Feature: gene Location: 280109-280501 bp Ori: EOI65213.1 Feature: domain Description: TcpE Location: 280127-280427 bp Feature: domain Description: TcpE Location: 2801 27-280427 bp Feature: gene Location: 280485-282038 bp Ori: EOI65214.1 Feature: domain Description: AAA_10 Location: 281817-282003 bp Feature: domain Description: AAA_1 0 Location: 281 81 7-282003 bp Feature: gene Location: 282735-284561 bp Ori: EOI65215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283035-283734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283035-283734 bp Feature: gene Location: 284695-285612 bp Ori: EOI65216.1 Feature: domain Description: AAA_10 Location: 284698-285580 bp Feature: domain Description: AAA_1 0 Location: 284698-285580 bp Feature: gene Location: 285615-287798 bp Feature: gene Location: 432388-433269 bp Ori: EOI64702.1 Feature: domain Description: CcmA Location: 432391-433261 bp Feature: domain Description: CcmA Location: 432391 -433261 bp Feature: gene Location: 433523-434122 bp Ori: EOI64703.1 Feature: domain Description: AcrR Location: 433541-434027 bp Feature: domain Description: AcrR Location: 433541 -434027 bp Feature: gene Location: 434609-435997 bp Ori: EOI64704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434930-435545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434930-435545 bp Feature: domain Description: GIIM Note: maturase Location: 435602-435818 bp Feature: domain Description: GIIM Note: maturase Location: 435602-43581 8 bp Feature: gene Location: 436090-437391 bp Ori: EOI64705.1 Feature: domain Description: CE4_DAC_u3_5s Location: 436759-437149 bp Feature: domain Description: CE4_DAC_u3_5s Location: 436759-4371 49 bp Feature: gene Location: 437971-439227 bp Ori: EOI64706.1 Feature: domain Description: PRK13354 Location: 437974-439219 bp Feature: domain Description: PRK1 3354 Location: 437974-43921 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB946902.1 Enterococcus faecium EnGen0314 genomic scaffold acEQN-supercont1.4, whole genome shotgun sequence (272353 bp)
Overview 1 RT 1: 69883-74179 bp 2 RT 2: 133761-153398 bp Neighborhood of RT #1 [69883, 74187] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [133761, 153406] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 69883-70032 bp Feature: gene Location: 70199-70678 bp Ori: EOI63256.1 Feature: domain Description: DUF3841 Location: 70208-70583 bp Feature: domain Description: DUF3841 Location: 702 08-70583 bp Feature: gene Location: 70826-72352 bp Ori: EOI63257.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71264-71720 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 712 64-7172 0 bp Feature: gene Location: 72498-72812 bp Ori: EOI63258.1 Feature: domain Description: AlbA_2 Location: 72537-72708 bp Feature: domain Description: AlbA_2 Location: 72 537-72 708 bp Feature: gene Location: 72928-74187 bp Ori: EOI63259.1 Feature: domain Description: PRK09290 Location: 72934-74179 bp Feature: domain Description: PRK092 90 Location: 72 934-74179 bp Feature: gene Location: 133761-135884 bp Feature: gene Location: 135889-136809 bp Ori: EOI63015.1 Feature: domain Description: AAA_10 Location: 135892-136774 bp Feature: domain Description: AAA_10 Location: 135892 -136774 bp Feature: gene Location: 136943-138769 bp Ori: EOI63016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137243-137942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372 43-137942 bp Feature: gene Location: 139466-141016 bp Ori: EOI63017.1 Feature: domain Description: AAA_10 Location: 140795-140978 bp Feature: domain Description: AAA_10 Location: 140795-140978 bp Feature: gene Location: 141003-141392 bp Ori: EOI63018.1 Feature: domain Description: TcpE Location: 141021-141321 bp Feature: domain Description: TcpE Location: 14102 1-14132 1 bp Feature: gene Location: 141452-141955 bp Ori: EOI63019.1 Feature: domain Description: ArdA Location: 141470-141941 bp Feature: domain Description: ArdA Location: 141470-141941 bp Feature: gene Location: 142296-144206 bp Ori: EOI63020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142629-143367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 62 9-143367 bp Feature: domain Description: HNHc Note: nucleases Location: 143922-144087 bp Feature: domain Description: HNHc Note: nucleases Location: 14392 2 -144087 bp Feature: gene Location: 144952-145089 bp Ori: EOI63021.1 Feature: domain Description: DUF3789 Location: 144979-145072 bp Feature: domain Description: DUF3789 Location: 144979-145072 bp Feature: gene Location: 145086-146270 bp Ori: EOI63022.1 Feature: domain Description: HTH_XRE Location: 145116-145260 bp Feature: domain Description: HTH_XRE Location: 145116-1452 60 bp Feature: domain Description: Rol_Rep_N Location: 145293-145557 bp Feature: domain Description: Rol_Rep_N Location: 1452 93-145557 bp Feature: domain Description: Rep_trans Location: 145581-146193 bp Feature: domain Description: Rep_trans Location: 145581-146193 bp Feature: gene Location: 148184-148858 bp Ori: EOI63027.1 Feature: domain Description: Zeta_toxin Location: 148283-148766 bp Feature: domain Description: Zeta_toxin Location: 1482 83-148766 bp Feature: gene Location: 148936-149175 bp Feature: gene Location: 149269-151128 bp Ori: EOI63029.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149578-150319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149578-150319 bp Feature: domain Description: HNHc Note: nucleases Location: 150874-151012 bp Feature: domain Description: HNHc Note: nucleases Location: 150874-151012 bp Feature: gene Location: 151843-152988 bp Ori: EOI63030.1 Feature: domain Description: FtsK Location: 152503-152968 bp Feature: domain Description: FtsK Location: 152 503-152 968 bp Feature: gene Location: 153071-153406 bp Ori: EOI63031.1 Feature: domain Description: RelB_DinJ Location: 153275-153398 bp Feature: domain Description: RelB_DinJ Location: 1532 75-153398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB946884.1 Enterococcus faecium EnGen0314 genomic scaffold acEQN-supercont1.12, whole genome shotgun sequence (3533 bp)
Overview 1 RT 1: 63-3533 bp Neighborhood of RT #1 [63, 3533] HsdM RVT-AbiP2 Feature: gene Location: 63-1541 bp Ori: EOI54465.1 Feature: domain Description: HsdM Location: 84-1509 bp Feature: domain Description: HsdM Location: 84-1509 bp Feature: gene Location: 1879-3354 bp Ori: EOI54466.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Feature: gene Location: 3332-3533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2