myRT

myRT report for GCA_000394655.1_Ente_faec_Efm_NY1-2_V1

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Seq: KB946931.1 Enterococcus faecium EnGen0316 genomic scaffold acEQv-supercont1.4, whole genome shotgun sequence (270778 bp)
Overview 1 RT 1: 67265-71561 bp 2 RT 2: 132924-152561 bp Neighborhood of RT #1 [67265, 71569] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [132924, 152569] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 67265-67414 bp Feature: gene Location: 67581-68060 bp Ori: EOI65529.1 Feature: domain Description: DUF3841 Location: 67590-67965 bp Feature: domain Description: DUF3841 Location: 67590-67965 bp Feature: gene Location: 68208-69734 bp Ori: EOI65530.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68646-69102 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68646-691 02 bp Feature: gene Location: 69880-70194 bp Ori: EOI65531.1 Feature: domain Description: AlbA_2 Location: 69919-70090 bp Feature: domain Description: AlbA_2 Location: 6991 9-70090 bp Feature: gene Location: 70310-71569 bp Ori: EOI65532.1 Feature: domain Description: PRK09290 Location: 70316-71561 bp Feature: domain Description: PRK09290 Location: 7031 6-71 561 bp Feature: gene Location: 132924-135047 bp Feature: gene Location: 135052-135972 bp Ori: EOI65232.1 Feature: domain Description: AAA_10 Location: 135055-135937 bp Feature: domain Description: AAA_1 0 Location: 1 35055-1 35937 bp Feature: gene Location: 136106-137932 bp Ori: EOI65233.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136406-137105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36406-1 371 05 bp Feature: gene Location: 138629-140179 bp Ori: EOI65234.1 Feature: domain Description: AAA_10 Location: 139958-140141 bp Feature: domain Description: AAA_1 0 Location: 1 39958-1 401 41 bp Feature: gene Location: 140166-140555 bp Ori: EOI65235.1 Feature: domain Description: TcpE Location: 140184-140484 bp Feature: domain Description: TcpE Location: 1 401 84-1 40484 bp Feature: gene Location: 140615-141118 bp Ori: EOI65236.1 Feature: domain Description: ArdA Location: 140633-141104 bp Feature: domain Description: ArdA Location: 1 40633-1 41 1 04 bp Feature: gene Location: 141459-143369 bp Ori: EOI65237.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141792-142530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 792-1 42530 bp Feature: domain Description: HNHc Note: nucleases Location: 143085-143250 bp Feature: domain Description: HNHc Note: nucleases Location: 1 43085-1 43250 bp Feature: gene Location: 144115-144252 bp Ori: EOI65238.1 Feature: domain Description: DUF3789 Location: 144142-144235 bp Feature: domain Description: DUF3789 Location: 1 441 42-1 44235 bp Feature: gene Location: 144249-145433 bp Ori: EOI65239.1 Feature: domain Description: HTH_XRE Location: 144279-144423 bp Feature: domain Description: HTH_XRE Location: 1 44279-1 44423 bp Feature: domain Description: Rol_Rep_N Location: 144456-144720 bp Feature: domain Description: Rol_Rep_N Location: 1 44456-1 44720 bp Feature: domain Description: Rep_trans Location: 144744-145356 bp Feature: domain Description: Rep_trans Location: 1 44744-1 45356 bp Feature: gene Location: 147347-148021 bp Ori: EOI65244.1 Feature: domain Description: Zeta_toxin Location: 147446-147929 bp Feature: domain Description: Zeta_toxin Location: 1 47446-1 47929 bp Feature: gene Location: 148099-148338 bp Feature: gene Location: 148432-150291 bp Ori: EOI65246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148741-149482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48741 -1 49482 bp Feature: domain Description: HNHc Note: nucleases Location: 150037-150175 bp Feature: domain Description: HNHc Note: nucleases Location: 1 50037-1 501 75 bp Feature: gene Location: 151006-152151 bp Ori: EOI65247.1 Feature: domain Description: FtsK Location: 151666-152131 bp Feature: domain Description: FtsK Location: 1 51 666-1 521 31 bp Feature: gene Location: 152234-152569 bp Ori: EOI65248.1 Feature: domain Description: RelB_DinJ Location: 152438-152561 bp Feature: domain Description: RelB_DinJ Location: 1 52438-1 52561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB946908.1 Enterococcus faecium EnGen0316 genomic scaffold acEQv-supercont1.1, whole genome shotgun sequence (1024975 bp)
Overview 1 RT 1: 277706-295011 bp 2 RT 2: 439114-445945 bp Neighborhood of RT #1 [277706, 295011] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [439114, 445953] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 277706-278089 bp Ori: EOI67636.1 Feature: domain Description: DUF961 Location: 277721-278021 bp Feature: domain Description: DUF961 Location: 2 7772 1-2 7802 1 bp Feature: gene Location: 278118-279263 bp Ori: EOI67637.1 Feature: domain Description: FtsK Location: 278727-279243 bp Feature: domain Description: FtsK Location: 2 7872 7-2 792 43 bp Feature: gene Location: 279978-281837 bp Ori: EOI67638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280287-281028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 802 87-2 8102 8 bp Feature: domain Description: HNHc Note: nucleases Location: 281583-281721 bp Feature: domain Description: HNHc Note: nucleases Location: 2 81583-2 8172 1 bp Feature: gene Location: 281931-282215 bp Feature: gene Location: 282394-283599 bp Ori: EOI67640.1 Feature: domain Description: HTH_XRE Location: 282439-282583 bp Feature: domain Description: HTH_XRE Location: 2 82 439-2 82 583 bp Feature: domain Description: Rol_Rep_N Location: 282610-282877 bp Feature: domain Description: Rol_Rep_N Location: 2 82 610-2 82 877 bp Feature: domain Description: Rep_trans Location: 282901-283510 bp Feature: domain Description: Rep_trans Location: 2 82 901-2 83510 bp Feature: gene Location: 284383-286293 bp Ori: EOI67641.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284716-285454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 84716-2 85454 bp Feature: domain Description: HNHc Note: nucleases Location: 286009-286174 bp Feature: domain Description: HNHc Note: nucleases Location: 2 86009-2 86174 bp Feature: gene Location: 286738-287235 bp Ori: EOI67642.1 Feature: domain Description: ArdA Location: 286756-287221 bp Feature: domain Description: ArdA Location: 2 86756-2 872 2 1 bp Feature: gene Location: 287322-287714 bp Ori: EOI67643.1 Feature: domain Description: TcpE Location: 287340-287640 bp Feature: domain Description: TcpE Location: 2 87340-2 87640 bp Feature: gene Location: 287698-289251 bp Ori: EOI67644.1 Feature: domain Description: AAA_10 Location: 289030-289216 bp Feature: domain Description: AAA_10 Location: 2 89030-2 892 16 bp Feature: gene Location: 289948-291774 bp Ori: EOI67645.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290248-290947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 48-2 90947 bp Feature: gene Location: 291908-292825 bp Ori: EOI67646.1 Feature: domain Description: AAA_10 Location: 291911-292793 bp Feature: domain Description: AAA_10 Location: 2 91911-2 92 793 bp Feature: gene Location: 292828-295011 bp Feature: gene Location: 439114-439995 bp Ori: EOI67079.1 Feature: domain Description: CcmA Location: 439117-439987 bp Feature: domain Description: CcmA Location: 439117-439987 bp Feature: gene Location: 440249-440848 bp Ori: EOI67080.1 Feature: domain Description: AcrR Location: 440267-440753 bp Feature: domain Description: AcrR Location: 4402 67-440753 bp Feature: gene Location: 441335-442723 bp Ori: EOI67081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441656-442271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441656-442 2 71 bp Feature: domain Description: GIIM Note: maturase Location: 442328-442544 bp Feature: domain Description: GIIM Note: maturase Location: 442 32 8-442 544 bp Feature: gene Location: 442816-444117 bp Ori: EOI67082.1 Feature: domain Description: CE4_DAC_u3_5s Location: 443485-443875 bp Feature: domain Description: CE4_DAC_u3_5s Location: 443485-443875 bp Feature: gene Location: 444697-445953 bp Ori: EOI67083.1 Feature: domain Description: PRK13354 Location: 444700-445945 bp Feature: domain Description: PRK13354 Location: 444700-445945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB946915.1 Enterococcus faecium EnGen0316 genomic scaffold acEQv-supercont1.16, whole genome shotgun sequence (3409 bp)
Overview 1 RT 1: 61-2690 bp Neighborhood of RT #1 [61, 3352] HsdM RVT-AbiP2 Feature: gene Location: 61-1539 bp Ori: EOI60351.1 Feature: domain Description: HsdM Location: 82-1507 bp Feature: domain Description: HsdM Location: 82-1507 bp Feature: gene Location: 1877-3352 bp Ori: EOI60352.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2225-2690 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2225-2690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2