myRT

myRT report for GCA_000394675.1_Ente_faec_Efm_NY1-3_V1

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Seq: KB946942.1 Enterococcus faecium EnGen0318 genomic scaffold acEPK-supercont1.14, whole genome shotgun sequence (3562 bp)
Overview 1 RT 1: 63-3542 bp Neighborhood of RT #1 [63, 3562] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 63-1541 bp Ori: EOI60494.1 Feature: domain Description: HsdM Location: 84-1509 bp Feature: domain Description: HsdM Location: 84-1 509 bp Feature: gene Location: 1879-3354 bp Ori: EOI60495.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Feature: gene Location: 3332-3562 bp Ori: EOI60496.1 Feature: domain Description: Tra8 Location: 3335-3542 bp Feature: domain Description: Tra8 Location: 3335-3542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: KB946956.1 Enterococcus faecium EnGen0318 genomic scaffold acEPK-supercont1.6, whole genome shotgun sequence (280943 bp)
Overview 1 RT 1: 45251-62556 bp 2 RT 2: 206676-213507 bp Neighborhood of RT #1 [45251, 62556] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [206676, 213515] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 45251-45634 bp Ori: EOI65106.1 Feature: domain Description: DUF961 Location: 45266-45566 bp Feature: domain Description: DUF961 Location: 452 66-45566 bp Feature: gene Location: 45663-46808 bp Ori: EOI65107.1 Feature: domain Description: FtsK Location: 46272-46788 bp Feature: domain Description: FtsK Location: 462 72 -46788 bp Feature: gene Location: 47523-49382 bp Ori: EOI65108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47832-48573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47832 -48573 bp Feature: domain Description: HNHc Note: nucleases Location: 49128-49266 bp Feature: domain Description: HNHc Note: nucleases Location: 4912 8-492 66 bp Feature: gene Location: 49476-49760 bp Feature: gene Location: 49939-51144 bp Ori: EOI65110.1 Feature: domain Description: HTH_XRE Location: 49984-50128 bp Feature: domain Description: HTH_XRE Location: 49984-5012 8 bp Feature: domain Description: Rol_Rep_N Location: 50155-50422 bp Feature: domain Description: Rol_Rep_N Location: 50155-5042 2 bp Feature: domain Description: Rep_trans Location: 50446-51055 bp Feature: domain Description: Rep_trans Location: 50446-51055 bp Feature: gene Location: 51928-53838 bp Ori: EOI65111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52261-52999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 61-52 999 bp Feature: domain Description: HNHc Note: nucleases Location: 53554-53719 bp Feature: domain Description: HNHc Note: nucleases Location: 53554-53719 bp Feature: gene Location: 54283-54780 bp Ori: EOI65112.1 Feature: domain Description: ArdA Location: 54301-54766 bp Feature: domain Description: ArdA Location: 54301-54766 bp Feature: gene Location: 54867-55259 bp Ori: EOI65113.1 Feature: domain Description: TcpE Location: 54885-55185 bp Feature: domain Description: TcpE Location: 54885-55185 bp Feature: gene Location: 55243-56796 bp Ori: EOI65114.1 Feature: domain Description: AAA_10 Location: 56575-56761 bp Feature: domain Description: AAA_10 Location: 56575-56761 bp Feature: gene Location: 57493-59319 bp Ori: EOI65115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57793-58492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57793-58492 bp Feature: gene Location: 59453-60370 bp Ori: EOI65116.1 Feature: domain Description: AAA_10 Location: 59456-60338 bp Feature: domain Description: AAA_10 Location: 59456-60338 bp Feature: gene Location: 60373-62556 bp Feature: gene Location: 206676-207557 bp Ori: EOI64863.1 Feature: domain Description: CcmA Location: 206679-207549 bp Feature: domain Description: CcmA Location: 2 06679-2 07549 bp Feature: gene Location: 207811-208410 bp Ori: EOI64864.1 Feature: domain Description: AcrR Location: 207829-208315 bp Feature: domain Description: AcrR Location: 2 0782 9-2 08315 bp Feature: gene Location: 208897-210285 bp Ori: EOI64865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209218-209833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 092 18-2 09833 bp Feature: domain Description: GIIM Note: maturase Location: 209890-210106 bp Feature: domain Description: GIIM Note: maturase Location: 2 09890-2 10106 bp Feature: gene Location: 210378-211679 bp Ori: EOI64866.1 Feature: domain Description: CE4_DAC_u3_5s Location: 211047-211437 bp Feature: domain Description: CE4_DAC_u3_5s Location: 2 11047-2 11437 bp Feature: gene Location: 212259-213515 bp Ori: EOI64867.1 Feature: domain Description: PRK13354 Location: 212262-213507 bp Feature: domain Description: PRK13354 Location: 2 12 2 62 -2 13507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB946955.1 Enterococcus faecium EnGen0318 genomic scaffold acEPK-supercont1.5, whole genome shotgun sequence (270927 bp)
Overview 1 RT 1: 66924-71220 bp 2 RT 2: 130483-150120 bp Neighborhood of RT #1 [66924, 71228] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [130483, 150128] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 66924-67073 bp Feature: gene Location: 67240-67719 bp Ori: EOI65741.1 Feature: domain Description: DUF3841 Location: 67249-67624 bp Feature: domain Description: DUF3 841 Location: 67249-67624 bp Feature: gene Location: 67867-69393 bp Ori: EOI65742.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68305-68761 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 683 05-68761 bp Feature: gene Location: 69539-69853 bp Ori: EOI65743.1 Feature: domain Description: AlbA_2 Location: 69578-69749 bp Feature: domain Description: AlbA_2 Location: 69578-69749 bp Feature: gene Location: 69969-71228 bp Ori: EOI65744.1 Feature: domain Description: PRK09290 Location: 69975-71220 bp Feature: domain Description: PRK09290 Location: 69975-71220 bp Feature: gene Location: 130483-132606 bp Feature: gene Location: 132611-133531 bp Ori: EOI65391.1 Feature: domain Description: AAA_10 Location: 132614-133496 bp Feature: domain Description: AAA_10 Location: 13 2614-13 3 496 bp Feature: gene Location: 133665-135491 bp Ori: EOI65392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133965-134664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 965-13 4664 bp Feature: gene Location: 136188-137738 bp Ori: EOI65393.1 Feature: domain Description: AAA_10 Location: 137517-137700 bp Feature: domain Description: AAA_10 Location: 13 7517-13 7700 bp Feature: gene Location: 137725-138114 bp Ori: EOI65394.1 Feature: domain Description: TcpE Location: 137743-138043 bp Feature: domain Description: TcpE Location: 13 7743 -13 8043 bp Feature: gene Location: 138174-138677 bp Ori: EOI65395.1 Feature: domain Description: ArdA Location: 138192-138663 bp Feature: domain Description: ArdA Location: 13 8192-13 8663 bp Feature: gene Location: 139018-140928 bp Ori: EOI65396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139351-140089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 93 51-140089 bp Feature: domain Description: HNHc Note: nucleases Location: 140644-140809 bp Feature: domain Description: HNHc Note: nucleases Location: 140644-140809 bp Feature: gene Location: 141674-141811 bp Ori: EOI65397.1 Feature: domain Description: DUF3789 Location: 141701-141794 bp Feature: domain Description: DUF3 789 Location: 141701-141794 bp Feature: gene Location: 141808-142992 bp Ori: EOI65398.1 Feature: domain Description: HTH_XRE Location: 141838-141982 bp Feature: domain Description: HTH_XRE Location: 14183 8-141982 bp Feature: domain Description: Rol_Rep_N Location: 142015-142279 bp Feature: domain Description: Rol_Rep_N Location: 142015-142279 bp Feature: domain Description: Rep_trans Location: 142303-142915 bp Feature: domain Description: Rep_trans Location: 1423 03 -142915 bp Feature: gene Location: 144906-145580 bp Ori: EOI65403.1 Feature: domain Description: Zeta_toxin Location: 145005-145488 bp Feature: domain Description: Zeta_toxin Location: 145005-145488 bp Feature: gene Location: 145658-145897 bp Feature: gene Location: 145991-147850 bp Ori: EOI65405.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146300-147041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463 00-147041 bp Feature: domain Description: HNHc Note: nucleases Location: 147596-147734 bp Feature: domain Description: HNHc Note: nucleases Location: 147596-14773 4 bp Feature: gene Location: 148565-149710 bp Ori: EOI65406.1 Feature: domain Description: FtsK Location: 149225-149690 bp Feature: domain Description: FtsK Location: 149225-149690 bp Feature: gene Location: 149793-150128 bp Ori: EOI65407.1 Feature: domain Description: RelB_DinJ Location: 149997-150120 bp Feature: domain Description: RelB_DinJ Location: 149997-150120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)