myRT

myRT report for GCA_000394695.1_Ente_faec_Efm_NY1-4_V1

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Seq: KB946960.1 Enterococcus faecium EnGen0319 genomic scaffold acEQq-supercont1.1, whole genome shotgun sequence (1030884 bp)
Overview 1 RT 1: 277992-295297 bp 2 RT 2: 440104-446935 bp Neighborhood of RT #1 [277992, 295297] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [440104, 446943] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 277992-278375 bp Ori: EOI75577.1 Feature: domain Description: DUF961 Location: 278007-278307 bp Feature: domain Description: DUF961 Location: 278007-278307 bp Feature: gene Location: 278404-279549 bp Ori: EOI75578.1 Feature: domain Description: FtsK Location: 279013-279529 bp Feature: domain Description: FtsK Location: 27901 3-279529 bp Feature: gene Location: 280264-282123 bp Ori: EOI75579.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280573-281314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280573-281 31 4 bp Feature: domain Description: HNHc Note: nucleases Location: 281869-282007 bp Feature: domain Description: HNHc Note: nucleases Location: 281 869-282007 bp Feature: gene Location: 282217-282501 bp Feature: gene Location: 282680-283885 bp Ori: EOI75581.1 Feature: domain Description: HTH_XRE Location: 282725-282869 bp Feature: domain Description: HTH_XRE Location: 282725-282869 bp Feature: domain Description: Rol_Rep_N Location: 282896-283163 bp Feature: domain Description: Rol_Rep_N Location: 282896-2831 63 bp Feature: domain Description: Rep_trans Location: 283187-283796 bp Feature: domain Description: Rep_trans Location: 2831 87-283796 bp Feature: gene Location: 284669-286579 bp Ori: EOI75582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285002-285740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285002-285740 bp Feature: domain Description: HNHc Note: nucleases Location: 286295-286460 bp Feature: domain Description: HNHc Note: nucleases Location: 286295-286460 bp Feature: gene Location: 287024-287521 bp Ori: EOI75583.1 Feature: domain Description: ArdA Location: 287042-287507 bp Feature: domain Description: ArdA Location: 287042-287507 bp Feature: gene Location: 287608-288000 bp Ori: EOI75584.1 Feature: domain Description: TcpE Location: 287626-287926 bp Feature: domain Description: TcpE Location: 287626-287926 bp Feature: gene Location: 287984-289537 bp Ori: EOI75585.1 Feature: domain Description: AAA_10 Location: 289316-289502 bp Feature: domain Description: AAA_1 0 Location: 28931 6-289502 bp Feature: gene Location: 290234-292060 bp Ori: EOI75586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290534-291233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290534-291 233 bp Feature: gene Location: 292194-293111 bp Ori: EOI75587.1 Feature: domain Description: AAA_10 Location: 292197-293079 bp Feature: domain Description: AAA_1 0 Location: 2921 97-293079 bp Feature: gene Location: 293114-295297 bp Feature: gene Location: 440104-440985 bp Ori: EOI75180.1 Feature: domain Description: CcmA Location: 440107-440977 bp Feature: domain Description: CcmA Location: 4401 07-440977 bp Feature: gene Location: 441239-441838 bp Ori: EOI75181.1 Feature: domain Description: AcrR Location: 441257-441743 bp Feature: domain Description: AcrR Location: 441 257-441 743 bp Feature: gene Location: 442325-443713 bp Ori: EOI75182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442646-443261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442646-443261 bp Feature: domain Description: GIIM Note: maturase Location: 443318-443534 bp Feature: domain Description: GIIM Note: maturase Location: 44331 8-443534 bp Feature: gene Location: 443806-445107 bp Ori: EOI75183.1 Feature: domain Description: CE4_DAC_u3_5s Location: 444475-444865 bp Feature: domain Description: CE4_DAC_u3_5s Location: 444475-444865 bp Feature: gene Location: 445687-446943 bp Ori: EOI75184.1 Feature: domain Description: PRK13354 Location: 445690-446935 bp Feature: domain Description: PRK1 3354 Location: 445690-446935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB946984.1 Enterococcus faecium EnGen0319 genomic scaffold acEQq-supercont1.6, whole genome shotgun sequence (275789 bp)
Overview 1 RT 1: 68904-73200 bp 2 RT 2: 133340-152977 bp Neighborhood of RT #1 [68904, 73208] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [133340, 152985] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 68904-69053 bp Feature: gene Location: 69220-69699 bp Ori: EOI71795.1 Feature: domain Description: DUF3841 Location: 69229-69604 bp Feature: domain Description: DUF3841 Location: 692 2 9-69604 bp Feature: gene Location: 69847-71373 bp Ori: EOI71796.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 70285-70741 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 702 85-70741 bp Feature: gene Location: 71519-71833 bp Ori: EOI71797.1 Feature: domain Description: AlbA_2 Location: 71558-71729 bp Feature: domain Description: AlbA_2 Location: 71558-7172 9 bp Feature: gene Location: 71949-73208 bp Ori: EOI71798.1 Feature: domain Description: PRK09290 Location: 71955-73200 bp Feature: domain Description: PRK092 90 Location: 71955-732 00 bp Feature: gene Location: 133340-135463 bp Feature: gene Location: 135468-136388 bp Ori: EOI71570.1 Feature: domain Description: AAA_10 Location: 135471-136353 bp Feature: domain Description: AAA_10 Location: 135471-136353 bp Feature: gene Location: 136522-138348 bp Ori: EOI71571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136822-137521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682 2 -13752 1 bp Feature: gene Location: 139045-140595 bp Ori: EOI71572.1 Feature: domain Description: AAA_10 Location: 140374-140557 bp Feature: domain Description: AAA_10 Location: 140374-140557 bp Feature: gene Location: 140582-140971 bp Ori: EOI71573.1 Feature: domain Description: TcpE Location: 140600-140900 bp Feature: domain Description: TcpE Location: 140600-140900 bp Feature: gene Location: 141031-141534 bp Ori: EOI71574.1 Feature: domain Description: ArdA Location: 141049-141520 bp Feature: domain Description: ArdA Location: 141049-14152 0 bp Feature: gene Location: 141875-143785 bp Ori: EOI71575.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142208-142946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 2 08-142 946 bp Feature: domain Description: HNHc Note: nucleases Location: 143501-143666 bp Feature: domain Description: HNHc Note: nucleases Location: 143501-143666 bp Feature: gene Location: 144531-144668 bp Ori: EOI71576.1 Feature: domain Description: DUF3789 Location: 144558-144651 bp Feature: domain Description: DUF3789 Location: 144558-144651 bp Feature: gene Location: 144665-145849 bp Ori: EOI71577.1 Feature: domain Description: HTH_XRE Location: 144695-144839 bp Feature: domain Description: HTH_XRE Location: 144695-144839 bp Feature: domain Description: Rol_Rep_N Location: 144872-145136 bp Feature: domain Description: Rol_Rep_N Location: 144872 -145136 bp Feature: domain Description: Rep_trans Location: 145160-145772 bp Feature: domain Description: Rep_trans Location: 145160-145772 bp Feature: gene Location: 147763-148437 bp Ori: EOI71582.1 Feature: domain Description: Zeta_toxin Location: 147862-148345 bp Feature: domain Description: Zeta_toxin Location: 147862 -148345 bp Feature: gene Location: 148515-148754 bp Feature: gene Location: 148848-150707 bp Ori: EOI71584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149157-149898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149157-149898 bp Feature: domain Description: HNHc Note: nucleases Location: 150453-150591 bp Feature: domain Description: HNHc Note: nucleases Location: 150453-150591 bp Feature: gene Location: 151422-152567 bp Ori: EOI71585.1 Feature: domain Description: FtsK Location: 152082-152547 bp Feature: domain Description: FtsK Location: 152 082 -152 547 bp Feature: gene Location: 152650-152985 bp Ori: EOI71586.1 Feature: domain Description: RelB_DinJ Location: 152854-152977 bp Feature: domain Description: RelB_DinJ Location: 152 854-152 977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB946962.1 Enterococcus faecium EnGen0319 genomic scaffold acEQq-supercont1.11, whole genome shotgun sequence (3686 bp)
Overview 1 RT 1: 1-3666 bp Neighborhood of RT #1 [1, 3686] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 1-164 bp Feature: gene Location: 187-1665 bp Ori: EOI68360.1 Feature: domain Description: HsdM Location: 208-1633 bp Feature: domain Description: HsdM Location: 208-163 3 bp Feature: gene Location: 2003-3478 bp Ori: EOI68361.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2351-2816 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 51-2816 bp Feature: gene Location: 3456-3686 bp Ori: EOI68362.1 Feature: domain Description: Tra8 Location: 3459-3666 bp Feature: domain Description: Tra8 Location: 3 459-3 666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)