myRT

myRT report for GCA_000394715.1_Ente_faec_Efm_NY1-5_V1

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Seq: KB947014.1 Enterococcus faecium EnGen0321 genomic scaffold acEQw-supercont1.9, whole genome shotgun sequence (131043 bp)
Overview 1 RT 1: 3353-8567 bp Neighborhood of RT #1 [3353, 8575] Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 3353-4027 bp Ori: EOI70738.1 Feature: domain Description: Zeta_toxin Location: 3452-3935 bp Feature: domain Description: Zeta_toxin Location: 3452-3935 bp Feature: gene Location: 4105-4344 bp Feature: gene Location: 4438-6297 bp Ori: EOI70740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747-5488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747-5488 bp Feature: domain Description: HNHc Note: nucleases Location: 6043-6181 bp Feature: domain Description: HNHc Note: nucleases Location: 6043-61 81 bp Feature: gene Location: 7012-8157 bp Ori: EOI70741.1 Feature: domain Description: FtsK Location: 7672-8137 bp Feature: domain Description: FtsK Location: 7672-81 37 bp Feature: gene Location: 8240-8575 bp Ori: EOI70742.1 Feature: domain Description: RelB_DinJ Location: 8444-8567 bp Feature: domain Description: RelB_DinJ Location: 8444-8567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zeta_toxin (pfam06414), RVT-GII, HNHc (smart00507), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB947004.1 Enterococcus faecium EnGen0321 genomic scaffold acEQw-supercont1.24, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 733-2476 bp Neighborhood of RT #1 [733, 2592] RVT-GII HNHc Feature: gene Location: 733-2592 bp Ori: EOI68341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042-1783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042 -1783 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2476 bp Feature: domain Description: HNHc Note: nucleases Location: 2 338-2 476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: KB946999.1 Enterococcus faecium EnGen0321 genomic scaffold acEQw-supercont1.2, whole genome shotgun sequence (354586 bp)
Overview 1 RT 1: 115122-132427 bp 2 RT 2: 277215-284046 bp Neighborhood of RT #1 [115122, 132427] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [277215, 284054] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 115122-115505 bp Ori: EOI76095.1 Feature: domain Description: DUF961 Location: 115137-115437 bp Feature: domain Description: DUF961 Location: 11513 7-11543 7 bp Feature: gene Location: 115534-116679 bp Ori: EOI76096.1 Feature: domain Description: FtsK Location: 116143-116659 bp Feature: domain Description: FtsK Location: 116143 -116659 bp Feature: gene Location: 117394-119253 bp Ori: EOI76097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117703-118444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117703 -118444 bp Feature: domain Description: HNHc Note: nucleases Location: 118999-119137 bp Feature: domain Description: HNHc Note: nucleases Location: 118999-11913 7 bp Feature: gene Location: 119347-119631 bp Feature: gene Location: 119810-121015 bp Ori: EOI76099.1 Feature: domain Description: HTH_XRE Location: 119855-119999 bp Feature: domain Description: HTH_XRE Location: 119855-119999 bp Feature: domain Description: Rol_Rep_N Location: 120026-120293 bp Feature: domain Description: Rol_Rep_N Location: 120026-120293 bp Feature: domain Description: Rep_trans Location: 120317-120926 bp Feature: domain Description: Rep_trans Location: 1203 17-120926 bp Feature: gene Location: 121799-123709 bp Ori: EOI76100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122132-122870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12213 2-122870 bp Feature: domain Description: HNHc Note: nucleases Location: 123425-123590 bp Feature: domain Description: HNHc Note: nucleases Location: 123 425-123 590 bp Feature: gene Location: 124154-124651 bp Ori: EOI76101.1 Feature: domain Description: ArdA Location: 124172-124637 bp Feature: domain Description: ArdA Location: 124172-12463 7 bp Feature: gene Location: 124738-125130 bp Ori: EOI76102.1 Feature: domain Description: TcpE Location: 124756-125056 bp Feature: domain Description: TcpE Location: 124756-125056 bp Feature: gene Location: 125114-126667 bp Ori: EOI76103.1 Feature: domain Description: AAA_10 Location: 126446-126632 bp Feature: domain Description: AAA_10 Location: 126446-12663 2 bp Feature: gene Location: 127364-129190 bp Ori: EOI76104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127664-128363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127664-1283 63 bp Feature: gene Location: 129324-130241 bp Ori: EOI76105.1 Feature: domain Description: AAA_10 Location: 129327-130209 bp Feature: domain Description: AAA_10 Location: 1293 27-13 0209 bp Feature: gene Location: 130244-132427 bp Feature: gene Location: 277215-278096 bp Ori: EOI75676.1 Feature: domain Description: CcmA Location: 277218-278088 bp Feature: domain Description: CcmA Location: 277218-278088 bp Feature: gene Location: 278350-278949 bp Ori: EOI75677.1 Feature: domain Description: AcrR Location: 278368-278854 bp Feature: domain Description: AcrR Location: 2783 68-278854 bp Feature: gene Location: 279436-280824 bp Ori: EOI75678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279757-280372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279757-2803 72 bp Feature: domain Description: GIIM Note: maturase Location: 280429-280645 bp Feature: domain Description: GIIM Note: maturase Location: 280429-280645 bp Feature: gene Location: 280917-282218 bp Ori: EOI75679.1 Feature: domain Description: CE4_DAC_u3_5s Location: 281586-281976 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 281586-281976 bp Feature: gene Location: 282798-284054 bp Ori: EOI75680.1 Feature: domain Description: PRK13354 Location: 282801-284046 bp Feature: domain Description: PRK13 3 54 Location: 282801-284046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB947010.1 Enterococcus faecium EnGen0321 genomic scaffold acEQw-supercont1.5, whole genome shotgun sequence (138619 bp)
Overview 1 RT 1: 71232-75528 bp Neighborhood of RT #1 [71232, 75536] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 71232-71381 bp Feature: gene Location: 71548-72027 bp Ori: EOI74421.1 Feature: domain Description: DUF3841 Location: 71557-71932 bp Feature: domain Description: DUF384 1 Location: 71557-71932 bp Feature: gene Location: 72175-73701 bp Ori: EOI74422.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 72613-73069 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 72613-73069 bp Feature: gene Location: 73847-74161 bp Ori: EOI74423.1 Feature: domain Description: AlbA_2 Location: 73886-74057 bp Feature: domain Description: AlbA_2 Location: 73886-74 057 bp Feature: gene Location: 74277-75536 bp Ori: EOI74424.1 Feature: domain Description: PRK09290 Location: 74283-75528 bp Feature: domain Description: PRK09290 Location: 74 283-75528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)