myRT

myRT report for GCA_000394735.1_Ente_faec_Efm_NY1-6_V1

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Seq: KB947043.1 Enterococcus faecium EnGen0323 genomic scaffold acEQi-supercont1.6, whole genome shotgun sequence (271910 bp)
Overview 1 RT 1: 34070-51375 bp 2 RT 2: 196058-202889 bp Neighborhood of RT #1 [34070, 51375] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [196058, 202897] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 34070-34453 bp Ori: EOI75804.1 Feature: domain Description: DUF961 Location: 34085-34385 bp Feature: domain Description: DUF961 Location: 34085-34385 bp Feature: gene Location: 34482-35627 bp Ori: EOI75805.1 Feature: domain Description: FtsK Location: 35091-35607 bp Feature: domain Description: FtsK Location: 35091 -35607 bp Feature: gene Location: 36342-38201 bp Ori: EOI75806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36651-37392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36651 -37392 bp Feature: domain Description: HNHc Note: nucleases Location: 37947-38085 bp Feature: domain Description: HNHc Note: nucleases Location: 37947-38085 bp Feature: gene Location: 38295-38579 bp Feature: gene Location: 38758-39963 bp Ori: EOI75808.1 Feature: domain Description: HTH_XRE Location: 38803-38947 bp Feature: domain Description: HTH_XRE Location: 38803-38947 bp Feature: domain Description: Rol_Rep_N Location: 38974-39241 bp Feature: domain Description: Rol_Rep_N Location: 38974-39241 bp Feature: domain Description: Rep_trans Location: 39265-39874 bp Feature: domain Description: Rep_trans Location: 39265-39874 bp Feature: gene Location: 40747-42657 bp Ori: EOI75809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41080-41818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 080-41 81 8 bp Feature: domain Description: HNHc Note: nucleases Location: 42373-42538 bp Feature: domain Description: HNHc Note: nucleases Location: 42373-42538 bp Feature: gene Location: 43102-43599 bp Ori: EOI75810.1 Feature: domain Description: ArdA Location: 43120-43585 bp Feature: domain Description: ArdA Location: 431 20-43585 bp Feature: gene Location: 43686-44078 bp Ori: EOI75811.1 Feature: domain Description: TcpE Location: 43704-44004 bp Feature: domain Description: TcpE Location: 43704-44004 bp Feature: gene Location: 44062-45615 bp Ori: EOI75812.1 Feature: domain Description: AAA_10 Location: 45394-45580 bp Feature: domain Description: AAA_1 0 Location: 45394-45580 bp Feature: gene Location: 46312-48138 bp Ori: EOI75813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46612-47311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4661 2-4731 1 bp Feature: gene Location: 48272-49189 bp Ori: EOI75814.1 Feature: domain Description: AAA_10 Location: 48275-49157 bp Feature: domain Description: AAA_1 0 Location: 48275-491 57 bp Feature: gene Location: 49192-51375 bp Feature: gene Location: 196058-196939 bp Ori: EOI75389.1 Feature: domain Description: CcmA Location: 196061-196931 bp Feature: domain Description: CcmA Location: 1 96061 -1 96931 bp Feature: gene Location: 197193-197792 bp Ori: EOI75390.1 Feature: domain Description: AcrR Location: 197211-197697 bp Feature: domain Description: AcrR Location: 1 9721 1 -1 97697 bp Feature: gene Location: 198279-199667 bp Ori: EOI75391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198600-199215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 98600-1 9921 5 bp Feature: domain Description: GIIM Note: maturase Location: 199272-199488 bp Feature: domain Description: GIIM Note: maturase Location: 1 99272-1 99488 bp Feature: gene Location: 199760-201061 bp Ori: EOI75392.1 Feature: domain Description: CE4_DAC_u3_5s Location: 200429-200819 bp Feature: domain Description: CE4_DAC_u3_5s Location: 200429-20081 9 bp Feature: gene Location: 201641-202897 bp Ori: EOI75393.1 Feature: domain Description: PRK13354 Location: 201644-202889 bp Feature: domain Description: PRK1 3354 Location: 201 644-202889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KB947041.1 Enterococcus faecium EnGen0323 genomic scaffold acEQi-supercont1.4, whole genome shotgun sequence (273950 bp)
Overview 1 RT 1: 70025-74321 bp 2 RT 2: 132859-152496 bp Neighborhood of RT #1 [70025, 74329] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [132859, 152504] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 70025-70174 bp Feature: gene Location: 70341-70820 bp Ori: EOI76446.1 Feature: domain Description: DUF3841 Location: 70350-70725 bp Feature: domain Description: DUF3841 Location: 70350-7072 5 bp Feature: gene Location: 70968-72494 bp Ori: EOI76447.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71406-71862 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71406-71862 bp Feature: gene Location: 72640-72954 bp Ori: EOI76448.1 Feature: domain Description: AlbA_2 Location: 72679-72850 bp Feature: domain Description: AlbA_2 Location: 72 679-72 850 bp Feature: gene Location: 73070-74329 bp Ori: EOI76449.1 Feature: domain Description: PRK09290 Location: 73076-74321 bp Feature: domain Description: PRK092 90 Location: 73076-7432 1 bp Feature: gene Location: 132859-134982 bp Feature: gene Location: 134987-135907 bp Ori: EOI76183.1 Feature: domain Description: AAA_10 Location: 134990-135872 bp Feature: domain Description: AAA_10 Location: 134990-135872 bp Feature: gene Location: 136041-137867 bp Ori: EOI76184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136341-137040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136341-137040 bp Feature: gene Location: 138564-140114 bp Ori: EOI76185.1 Feature: domain Description: AAA_10 Location: 139893-140076 bp Feature: domain Description: AAA_10 Location: 139893-140076 bp Feature: gene Location: 140101-140490 bp Ori: EOI76186.1 Feature: domain Description: TcpE Location: 140119-140419 bp Feature: domain Description: TcpE Location: 140119-140419 bp Feature: gene Location: 140550-141053 bp Ori: EOI76187.1 Feature: domain Description: ArdA Location: 140568-141039 bp Feature: domain Description: ArdA Location: 140568-141039 bp Feature: gene Location: 141394-143304 bp Ori: EOI76188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141727-142465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14172 7-142 465 bp Feature: domain Description: HNHc Note: nucleases Location: 143020-143185 bp Feature: domain Description: HNHc Note: nucleases Location: 14302 0-143185 bp Feature: gene Location: 144050-144187 bp Ori: EOI76189.1 Feature: domain Description: DUF3789 Location: 144077-144170 bp Feature: domain Description: DUF3789 Location: 144077-144170 bp Feature: gene Location: 144184-145368 bp Ori: EOI76190.1 Feature: domain Description: HTH_XRE Location: 144214-144358 bp Feature: domain Description: HTH_XRE Location: 1442 14-144358 bp Feature: domain Description: Rol_Rep_N Location: 144391-144655 bp Feature: domain Description: Rol_Rep_N Location: 144391-144655 bp Feature: domain Description: Rep_trans Location: 144679-145291 bp Feature: domain Description: Rep_trans Location: 144679-1452 91 bp Feature: gene Location: 147282-147956 bp Ori: EOI76195.1 Feature: domain Description: Zeta_toxin Location: 147381-147864 bp Feature: domain Description: Zeta_toxin Location: 147381-147864 bp Feature: gene Location: 148034-148273 bp Feature: gene Location: 148367-150226 bp Ori: EOI76197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148676-149417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148676-149417 bp Feature: domain Description: HNHc Note: nucleases Location: 149972-150110 bp Feature: domain Description: HNHc Note: nucleases Location: 149972 -150110 bp Feature: gene Location: 150941-152086 bp Ori: EOI76198.1 Feature: domain Description: FtsK Location: 151601-152066 bp Feature: domain Description: FtsK Location: 151601-152 066 bp Feature: gene Location: 152169-152504 bp Ori: EOI76199.1 Feature: domain Description: RelB_DinJ Location: 152373-152496 bp Feature: domain Description: RelB_DinJ Location: 152 373-152 496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB947025.1 Enterococcus faecium EnGen0323 genomic scaffold acEQi-supercont1.19, whole genome shotgun sequence (3461 bp)
Overview 1 RT 1: 63-2692 bp Neighborhood of RT #1 [63, 3354] HsdM RVT-AbiP2 Feature: gene Location: 63-1541 bp Ori: EOI69011.1 Feature: domain Description: HsdM Location: 84-1509 bp Feature: domain Description: HsdM Location: 84-1509 bp Feature: gene Location: 1879-3354 bp Ori: EOI69012.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2227-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2