myRT

myRT report for GCA_000394755.1_Ente_faec_Efm_NY3-1_V1

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Seq: KB947057.1 Enterococcus faecium EnGen0312 genomic scaffold acEQF-supercont1.19, whole genome shotgun sequence (3409 bp)
Overview 1 RT 1: 61-2690 bp Neighborhood of RT #1 [61, 3352] HsdM RVT-AbiP2 Feature: gene Location: 61-1539 bp Ori: EOI77224.1 Feature: domain Description: HsdM Location: 82-1507 bp Feature: domain Description: HsdM Location: 82-1 507 bp Feature: gene Location: 1877-3352 bp Ori: EOI77225.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2225-2690 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2225-2690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: KB947072.1 Enterococcus faecium EnGen0312 genomic scaffold acEQF-supercont1.4, whole genome shotgun sequence (271816 bp)
Overview 1 RT 1: 69825-74121 bp 2 RT 2: 131389-151026 bp Neighborhood of RT #1 [69825, 74129] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [131389, 151034] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 69825-69974 bp Feature: gene Location: 70141-70620 bp Ori: EOI85726.1 Feature: domain Description: DUF3841 Location: 70150-70525 bp Feature: domain Description: DUF3841 Location: 70150-7052 5 bp Feature: gene Location: 70768-72294 bp Ori: EOI85727.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71206-71662 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 712 06-71662 bp Feature: gene Location: 72440-72754 bp Ori: EOI85728.1 Feature: domain Description: AlbA_2 Location: 72479-72650 bp Feature: domain Description: AlbA_2 Location: 72 479-72 650 bp Feature: gene Location: 72870-74129 bp Ori: EOI85729.1 Feature: domain Description: PRK09290 Location: 72876-74121 bp Feature: domain Description: PRK092 90 Location: 72 876-7412 1 bp Feature: gene Location: 131389-133512 bp Feature: gene Location: 133517-134437 bp Ori: EOI85518.1 Feature: domain Description: AAA_10 Location: 133520-134402 bp Feature: domain Description: AAA_10 Location: 13352 0-134402 bp Feature: gene Location: 134571-136397 bp Ori: EOI85519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134871-135570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134871-135570 bp Feature: gene Location: 137094-138644 bp Ori: EOI85520.1 Feature: domain Description: AAA_10 Location: 138423-138606 bp Feature: domain Description: AAA_10 Location: 13842 3-138606 bp Feature: gene Location: 138631-139020 bp Ori: EOI85521.1 Feature: domain Description: TcpE Location: 138649-138949 bp Feature: domain Description: TcpE Location: 138649-138949 bp Feature: gene Location: 139080-139583 bp Ori: EOI85522.1 Feature: domain Description: ArdA Location: 139098-139569 bp Feature: domain Description: ArdA Location: 139098-139569 bp Feature: gene Location: 139924-141834 bp Ori: EOI85523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140257-140995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402 57-140995 bp Feature: domain Description: HNHc Note: nucleases Location: 141550-141715 bp Feature: domain Description: HNHc Note: nucleases Location: 141550-141715 bp Feature: gene Location: 142580-142717 bp Ori: EOI85524.1 Feature: domain Description: DUF3789 Location: 142607-142700 bp Feature: domain Description: DUF3789 Location: 142 607-142 700 bp Feature: gene Location: 142714-143898 bp Ori: EOI85525.1 Feature: domain Description: HTH_XRE Location: 142744-142888 bp Feature: domain Description: HTH_XRE Location: 142 744-142 888 bp Feature: domain Description: Rol_Rep_N Location: 142921-143185 bp Feature: domain Description: Rol_Rep_N Location: 142 92 1-143185 bp Feature: domain Description: Rep_trans Location: 143209-143821 bp Feature: domain Description: Rep_trans Location: 1432 09-14382 1 bp Feature: gene Location: 145812-146486 bp Ori: EOI85530.1 Feature: domain Description: Zeta_toxin Location: 145911-146394 bp Feature: domain Description: Zeta_toxin Location: 145911-146394 bp Feature: gene Location: 146564-146803 bp Feature: gene Location: 146897-148756 bp Ori: EOI85532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147206-147947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1472 06-147947 bp Feature: domain Description: HNHc Note: nucleases Location: 148502-148640 bp Feature: domain Description: HNHc Note: nucleases Location: 148502 -148640 bp Feature: gene Location: 149471-150616 bp Ori: EOI85533.1 Feature: domain Description: FtsK Location: 150131-150596 bp Feature: domain Description: FtsK Location: 150131-150596 bp Feature: gene Location: 150699-151034 bp Ori: EOI85534.1 Feature: domain Description: RelB_DinJ Location: 150903-151026 bp Feature: domain Description: RelB_DinJ Location: 150903-15102 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KB947074.1 Enterococcus faecium EnGen0312 genomic scaffold acEQF-supercont1.6, whole genome shotgun sequence (281386 bp)
Overview 1 RT 1: 45293-62598 bp 2 RT 2: 207218-214049 bp Neighborhood of RT #1 [45293, 62598] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [207218, 214057] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 45293-45676 bp Ori: EOI84292.1 Feature: domain Description: DUF961 Location: 45308-45608 bp Feature: domain Description: DUF961 Location: 453 08-45608 bp Feature: gene Location: 45705-46850 bp Ori: EOI84293.1 Feature: domain Description: FtsK Location: 46314-46830 bp Feature: domain Description: FtsK Location: 463 14-4683 0 bp Feature: gene Location: 47565-49424 bp Ori: EOI84294.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47874-48615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47874-48615 bp Feature: domain Description: HNHc Note: nucleases Location: 49170-49308 bp Feature: domain Description: HNHc Note: nucleases Location: 49170-493 08 bp Feature: gene Location: 49518-49802 bp Feature: gene Location: 49981-51186 bp Ori: EOI84296.1 Feature: domain Description: HTH_XRE Location: 50026-50170 bp Feature: domain Description: HTH_XRE Location: 50026-50170 bp Feature: domain Description: Rol_Rep_N Location: 50197-50464 bp Feature: domain Description: Rol_Rep_N Location: 50197-50464 bp Feature: domain Description: Rep_trans Location: 50488-51097 bp Feature: domain Description: Rep_trans Location: 50488-51097 bp Feature: gene Location: 51970-53880 bp Ori: EOI84297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52303-53041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523 03 -53 041 bp Feature: domain Description: HNHc Note: nucleases Location: 53596-53761 bp Feature: domain Description: HNHc Note: nucleases Location: 53 596-53 761 bp Feature: gene Location: 54325-54822 bp Ori: EOI84298.1 Feature: domain Description: ArdA Location: 54343-54808 bp Feature: domain Description: ArdA Location: 543 43 -54808 bp Feature: gene Location: 54909-55301 bp Ori: EOI84299.1 Feature: domain Description: TcpE Location: 54927-55227 bp Feature: domain Description: TcpE Location: 54927-55227 bp Feature: gene Location: 55285-56838 bp Ori: EOI84300.1 Feature: domain Description: AAA_10 Location: 56617-56803 bp Feature: domain Description: AAA_10 Location: 56617-56803 bp Feature: gene Location: 57535-59361 bp Ori: EOI84301.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57835-58534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5783 5-5853 4 bp Feature: gene Location: 59495-60412 bp Ori: EOI84302.1 Feature: domain Description: AAA_10 Location: 59498-60380 bp Feature: domain Description: AAA_10 Location: 59498-603 80 bp Feature: gene Location: 60415-62598 bp Feature: gene Location: 207218-208099 bp Ori: EOI83261.1 Feature: domain Description: CcmA Location: 207221-208091 bp Feature: domain Description: CcmA Location: 207221-208091 bp Feature: gene Location: 208353-208952 bp Ori: EOI83262.1 Feature: domain Description: AcrR Location: 208371-208857 bp Feature: domain Description: AcrR Location: 2083 71-208857 bp Feature: gene Location: 209439-210827 bp Ori: EOI83263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209760-210375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209760-2103 75 bp Feature: domain Description: GIIM Note: maturase Location: 210432-210648 bp Feature: domain Description: GIIM Note: maturase Location: 21043 2-210648 bp Feature: gene Location: 210920-212221 bp Ori: EOI83264.1 Feature: domain Description: CE4_DAC_u3_5s Location: 211589-211979 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 211589-211979 bp Feature: gene Location: 212801-214057 bp Ori: EOI83265.1 Feature: domain Description: PRK13354 Location: 212804-214049 bp Feature: domain Description: PRK13 3 54 Location: 212804-214049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)