myRT

myRT report for GCA_000395885.1_Ente_faec_VRE_84_V1

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Seq: KB948138.1 Enterococcus faecium VRE 84 genomic scaffold acEPf-supercont1.25, whole genome shotgun sequence (238041 bp)
Overview 1 RT 1: 103863-109053 bp Neighborhood of RT #1 [103863, 109130] TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 103863-104252 bp Ori: EOG21278.1 Feature: domain Description: TcpE Location: 103881-104181 bp Feature: domain Description: TcpE Location: 1 03881 -1 041 81 bp Feature: gene Location: 104312-104815 bp Ori: EOG21279.1 Feature: domain Description: ArdA Location: 104330-104801 bp Feature: domain Description: ArdA Location: 1 04330-1 04801 bp Feature: gene Location: 105156-107066 bp Ori: EOG21280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105489-106227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05489-1 06227 bp Feature: domain Description: HNHc Note: nucleases Location: 106782-106947 bp Feature: domain Description: HNHc Note: nucleases Location: 1 06782-1 06947 bp Feature: gene Location: 107812-107949 bp Ori: EOG21281.1 Feature: domain Description: DUF3789 Location: 107839-107932 bp Feature: domain Description: DUF3789 Location: 1 07839-1 07932 bp Feature: gene Location: 107946-109130 bp Ori: EOG21282.1 Feature: domain Description: HTH_XRE Location: 107976-108120 bp Feature: domain Description: HTH_XRE Location: 1 07976-1 081 20 bp Feature: domain Description: Rol_Rep_N Location: 108153-108417 bp Feature: domain Description: Rol_Rep_N Location: 1 081 53-1 0841 7 bp Feature: domain Description: Rep_trans Location: 108441-109053 bp Feature: domain Description: Rep_trans Location: 1 08441 -1 09053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: KB948137.1 Enterococcus faecium VRE 84 genomic scaffold acEPf-supercont1.24, whole genome shotgun sequence (297379 bp)
Overview 1 RT 1: 247011-251924 bp Neighborhood of RT #1 [247011, 251924] VirB4 RVT-GII HNHc Feature: gene Location: 247011-247163 bp Feature: gene Location: 247157-248851 bp Ori: EOG22167.1 Feature: domain Description: VirB4 Location: 247475-248159 bp Feature: domain Description: VirB4 Location: 2 47475-2 48159 bp Feature: gene Location: 249539-251416 bp Ori: EOG22168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249854-250592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 49854-2 50592 bp Feature: domain Description: HNHc Note: nucleases Location: 251150-251303 bp Feature: domain Description: HNHc Note: nucleases Location: 2 51150-2 51303 bp Feature: gene Location: 251444-251554 bp Feature: gene Location: 251604-251924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)

Seq: KB948129.1 Enterococcus faecium VRE 84 genomic scaffold acEPf-supercont1.17, whole genome shotgun sequence (3378 bp)
Overview 1 RT 1: 30-2659 bp Neighborhood of RT #1 [30, 3321] HsdM RVT-AbiP2 Feature: gene Location: 30-1508 bp Ori: EOG26588.1 Feature: domain Description: HsdM Location: 51-1476 bp Feature: domain Description: HsdM Location: 51-1476 bp Feature: gene Location: 1846-3321 bp Ori: EOG26589.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2194-2659 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2194-2659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2