myRT

myRT report for GCA_000396945.1_Ente_faec_UAA952_V1

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Seq: KB949730.1 Enterococcus faecium UAA952 genomic scaffold acvKd-supercont1.20, whole genome shotgun sequence (254127 bp)
Overview 1 RT 1: 127556-139635 bp Neighborhood of RT #1 [127556, 139643] NT_2-5OAS_ClassI-CCAase ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 127556-128593 bp Ori: EOM36788.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 127649-128066 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 1 27649-1 28066 bp Feature: gene Location: 128719-129222 bp Ori: EOM36789.1 Feature: domain Description: ArdA Location: 128737-129208 bp Feature: domain Description: ArdA Location: 1 28737-1 29208 bp Feature: gene Location: 129563-131473 bp Ori: EOM36790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129896-130634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29896-1 30634 bp Feature: domain Description: HNHc Note: nucleases Location: 131189-131354 bp Feature: domain Description: HNHc Note: nucleases Location: 1 31 1 89-1 31 354 bp Feature: gene Location: 132243-132338 bp Ori: EOM36791.1 Feature: domain Description: DUF3789 Location: 132252-132336 bp Feature: domain Description: DUF3789 Location: 1 32252-1 32336 bp Feature: gene Location: 132353-133537 bp Ori: EOM36792.1 Feature: domain Description: HTH_XRE Location: 132383-132527 bp Feature: domain Description: HTH_XRE Location: 1 32383-1 32527 bp Feature: domain Description: Rol_Rep_N Location: 132560-132824 bp Feature: domain Description: Rol_Rep_N Location: 1 32560-1 32824 bp Feature: domain Description: Rep_trans Location: 132848-133460 bp Feature: domain Description: Rep_trans Location: 1 32848-1 33460 bp Feature: gene Location: 134072-135067 bp Ori: EOM36795.1 Feature: domain Description: dcm Location: 134078-135041 bp Feature: domain Description: dcm Location: 1 34078-1 35041 bp Feature: gene Location: 135264-135620 bp Ori: EOM36796.1 Feature: domain Description: FtsK Location: 135276-135492 bp Feature: domain Description: FtsK Location: 1 35276-1 35492 bp Feature: gene Location: 135746-137620 bp Ori: EOM36797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136112-136808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 361 1 2-1 36808 bp Feature: domain Description: HNHc Note: nucleases Location: 137348-137507 bp Feature: domain Description: HNHc Note: nucleases Location: 1 37348-1 37507 bp Feature: gene Location: 138214-139230 bp Ori: EOM36798.1 Feature: domain Description: FtsK_SpoIIIE Location: 138871-139111 bp Feature: domain Description: FtsK_SpoIIIE Location: 1 38871 -1 391 1 1 bp Feature: gene Location: 139299-139643 bp Ori: EOM36799.1 Feature: domain Description: RelB_DinJ Location: 139509-139635 bp Feature: domain Description: RelB_DinJ Location: 1 39509-1 39635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_2-5OAS_ClassI-CCAase (cd05400), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), dcm (TIGR00675), FtsK (COG1674)
FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: KB949731.1 Enterococcus faecium UAA952 genomic scaffold acvKd-supercont1.21, whole genome shotgun sequence (518467 bp)
Overview 1 RT 1: 125241-131923 bp Neighborhood of RT #1 [125241, 132000] PHP_HisPPase SMC_prok_B SMC_prok_B ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 125241-127088 bp Ori: EOM36315.1 Feature: domain Description: PHP_HisPPase Location: 125268-125745 bp Feature: domain Description: PHP_HisPPase Location: 12 52 68-12 5745 bp Feature: domain Description: SMC_prok_B Location: 126147-126246 bp Feature: domain Description: SMC_prok_B Location: 12 6147-12 62 46 bp Feature: domain Description: SMC_prok_B Location: 126576-127011 bp Feature: domain Description: SMC_prok_B Location: 12 6576-12 7011 bp Feature: gene Location: 127185-127685 bp Ori: EOM36316.1 Feature: domain Description: ArdA Location: 127203-127674 bp Feature: domain Description: ArdA Location: 12 72 03-12 7674 bp Feature: gene Location: 128026-129936 bp Ori: EOM36317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128359-129097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8359-12 9097 bp Feature: domain Description: HNHc Note: nucleases Location: 129652-129817 bp Feature: domain Description: HNHc Note: nucleases Location: 12 9652 -12 9817 bp Feature: gene Location: 130682-130819 bp Ori: EOM36318.1 Feature: domain Description: DUF3789 Location: 130709-130802 bp Feature: domain Description: DUF3789 Location: 130709-130802 bp Feature: gene Location: 130816-132000 bp Ori: EOM36319.1 Feature: domain Description: HTH_XRE Location: 130846-130990 bp Feature: domain Description: HTH_XRE Location: 130846-130990 bp Feature: domain Description: Rol_Rep_N Location: 131023-131287 bp Feature: domain Description: Rol_Rep_N Location: 13102 3-1312 87 bp Feature: domain Description: Rep_trans Location: 131311-131923 bp Feature: domain Description: Rep_trans Location: 131311-13192 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase (cd07432), SMC_prok_B (TIGR02168), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: KB949725.1 Enterococcus faecium UAA952 genomic scaffold acvKd-supercont1.16, whole genome shotgun sequence (207550 bp)
Overview 1 RT 1: 65-5979 bp 2 RT 2: 190668-195230 bp Neighborhood of RT #1 [65, 6053] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE Neighborhood of RT #2 [190668, 195230] VirB4 RVT-GII HNHc Feature: gene Location: 65-553 bp Ori: EOM38063.1 Feature: domain Description: FtsK Location: 71-410 bp Feature: domain Description: FtsK Location: 71-410 bp Feature: gene Location: 731-1936 bp Ori: EOM38064.1 Feature: domain Description: HTH_XRE Location: 776-920 bp Feature: domain Description: HTH_XRE Location: 776-920 bp Feature: domain Description: Rol_Rep_N Location: 947-1214 bp Feature: domain Description: Rol_Rep_N Location: 947-1214 bp Feature: domain Description: Rep_trans Location: 1238-1847 bp Feature: domain Description: Rep_trans Location: 123 8-1847 bp Feature: gene Location: 2720-4630 bp Ori: EOM38065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3053-3791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 053 -3 791 bp Feature: domain Description: HNHc Note: nucleases Location: 4346-4511 bp Feature: domain Description: HNHc Note: nucleases Location: 43 46-4511 bp Feature: gene Location: 5075-5572 bp Ori: EOM38066.1 Feature: domain Description: ArdA Location: 5093-5558 bp Feature: domain Description: ArdA Location: 5093 -5558 bp Feature: gene Location: 5661-6053 bp Ori: EOM38067.1 Feature: domain Description: TcpE Location: 5679-5979 bp Feature: domain Description: TcpE Location: 5679-5979 bp Feature: gene Location: 190668-190820 bp Feature: gene Location: 190814-192508 bp Ori: EOM37258.1 Feature: domain Description: VirB4 Location: 191129-191816 bp Feature: domain Description: VirB4 Location: 191129-191816 bp Feature: gene Location: 192845-194722 bp Ori: EOM37213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193160-193898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 160-193 898 bp Feature: domain Description: HNHc Note: nucleases Location: 194456-194609 bp Feature: domain Description: HNHc Note: nucleases Location: 194456-194609 bp Feature: gene Location: 194750-194860 bp Feature: gene Location: 194910-195230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648), VirB4 (COG3451)

Seq: KB949752.1 Enterococcus faecium UAA952 genomic scaffold acvKd-supercont1.8, whole genome shotgun sequence (7376 bp)
Overview 1 RT 1: 2638-6657 bp Neighborhood of RT #1 [2638, 7319] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like HsdM RVT-AbiP2 Feature: gene Location: 2638-3891 bp Ori: EOM38919.1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2902-3253 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2902-3253 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3310-3886 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3310-3886 bp Feature: gene Location: 3884-5506 bp Ori: EOM38920.1 Feature: domain Description: HsdM Location: 3905-5432 bp Feature: domain Description: HsdM Location: 3905-54 32 bp Feature: gene Location: 5844-7319 bp Ori: EOM38921.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6192-6657 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6192-6657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdM (COG0286), RVT-AbiP2