myRT

myRT report for GCA_000396965.1_Ente_faec_UAA1007_V1

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Seq: KB949767.1 Enterococcus faecium UAA1007 genomic scaffold acvKq-supercont1.6, whole genome shotgun sequence (738597 bp)
Overview 1 RT 1: 356988-361375 bp Neighborhood of RT #1 [356988, 361380] ldh RVT-GII GIIM Doc doc_partner Feature: gene Location: 356988-357161 bp Feature: gene Location: 357239-358183 bp Feature: domain Description: ldh Location: 357242-358178 bp Feature: domain Description: ldh Location: 357242-3581 78 bp Feature: gene Location: 358282-359670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358603-359218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358603-35921 8 bp Feature: domain Description: GIIM Note: maturase Location: 359275-359491 bp Feature: domain Description: GIIM Note: maturase Location: 359275-359491 bp Feature: gene Location: 360749-361147 bp Feature: domain Description: Doc Location: 360758-361118 bp Feature: domain Description: Doc Location: 360758-361 1 1 8 bp Feature: gene Location: 361144-361380 bp Feature: domain Description: doc_partner Location: 361165-361375 bp Feature: domain Description: doc_partner Location: 361 1 65-361 375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ldh (PRK00066), RVT-GII, GIIM (pfam08388), Doc (COG3654), doc_partner (TIGR02609)

Seq: KB949764.1 Enterococcus faecium UAA1007 genomic scaffold acvKq-supercont1.3, whole genome shotgun sequence (68395 bp)
Overview 1 RT 1: 27582-40213 bp Neighborhood of RT #1 [27582, 40410] rpoB PRK00566 RVT-GII GIIM HTH_LacI PBP1_ycjW_transcription_regulator_like AmyAc_Sucrose_phosphorylase-like_1 Feature: gene Location: 27582-31199 bp Feature: domain Description: rpoB Location: 27603-31017 bp Feature: domain Description: rpoB Location: 2 7603-31017 bp Feature: gene Location: 31278-34931 bp Feature: domain Description: PRK00566 Location: 31293-34869 bp Feature: domain Description: PRK00566 Location: 312 93-34869 bp Feature: gene Location: 35419-36807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35740-36355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35740-36355 bp Feature: domain Description: GIIM Note: maturase Location: 36412-36628 bp Feature: domain Description: GIIM Note: maturase Location: 36412 -3662 8 bp Feature: gene Location: 37425-38450 bp Feature: domain Description: HTH_LacI Location: 37446-37593 bp Feature: domain Description: HTH_LacI Location: 37446-37593 bp Feature: domain Description: PBP1_ycjW_transcription_regulator_like Location: 37614-38418 bp Feature: domain Description: PBP1_ycjW_transcription_regulator_like Location: 37614-38418 bp Feature: gene Location: 38725-40410 bp Feature: domain Description: AmyAc_Sucrose_phosphorylase-like_1 Location: 38851-40213 bp Feature: domain Description: AmyAc_Sucrose_phosphorylase-like_1 Location: 38851-402 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, GIIM (pfam08388), HTH_LacI (cd01392), PBP1_ycjW_transcription_regulator_like, AmyAc_Sucrose_phosphorylase-like_1 (cd11356)

Seq: KB949768.1 Enterococcus faecium UAA1007 genomic scaffold acvKq-supercont1.7, whole genome shotgun sequence (428763 bp)
Overview 1 RT 1: 78524-83895 bp Neighborhood of RT #1 [78524, 83972] PHP_HisPPase ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 78524-79060 bp Feature: domain Description: PHP_HisPPase Location: 78551-79019 bp Feature: domain Description: PHP_HisPPase Location: 78551-79019 bp Feature: gene Location: 79157-79657 bp Feature: domain Description: ArdA Location: 79175-79646 bp Feature: domain Description: ArdA Location: 79175-79646 bp Feature: gene Location: 79998-81908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80331-81069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803 3 1-81069 bp Feature: domain Description: HNHc Note: nucleases Location: 81624-81789 bp Feature: domain Description: HNHc Note: nucleases Location: 81624-81789 bp Feature: gene Location: 82654-82791 bp Feature: domain Description: DUF3789 Location: 82681-82774 bp Feature: domain Description: DUF3 789 Location: 82681-82774 bp Feature: gene Location: 82788-83972 bp Feature: domain Description: HTH_XRE Location: 82818-82962 bp Feature: domain Description: HTH_XRE Location: 82818-82962 bp Feature: domain Description: Rol_Rep_N Location: 82995-83259 bp Feature: domain Description: Rol_Rep_N Location: 82995-83 259 bp Feature: domain Description: Rep_trans Location: 83283-83895 bp Feature: domain Description: Rep_trans Location: 83 283 -83 895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase (cd07432), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)