myRT

myRT report for GCA_000397605.1_Ec72_E2F1_TOP2522-1_120714

Download annotations/find similar RTs

Seq: AOQU01000074.1 Escherichia coli TOP2522-1 76, whole genome shotgun sequence (5908 bp)
Overview 1 RT 1: 2051-4579 bp Neighborhood of RT #1 [2051, 5499] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 2051-2266 bp Feature: gene Location: 2357-2638 bp Feature: domain Description: HTH_XRE Location: 2372-2537 bp Feature: domain Description: HTH_XRE Location: 2372-2537 bp Feature: gene Location: 2631-3731 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2772-3324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2772-3324 bp Feature: gene Location: 3808-5499 bp Feature: domain Description: PRK13889 Location: 4000-4579 bp Feature: domain Description: PRK1 3889 Location: 4000-4579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: AOQU01000204.1 Escherichia coli TOP2522-1 221, whole genome shotgun sequence (10560 bp)
Overview 1 RT 1: 3662-7470 bp Neighborhood of RT #1 [3662, 7470] zf-ribbon_3 PinE RVT-UG2 Feature: gene Location: 3662-4264 bp Feature: domain Description: zf-ribbon_3 Location: 3671-3737 bp Feature: domain Description: zf-ribbon_3 Location: 3671-3737 bp Feature: gene Location: 4567-5199 bp Feature: domain Description: PinE Location: 4630-5185 bp Feature: domain Description: PinE Location: 4630-5185 bp Feature: gene Location: 5298-6635 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5550-6342 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5550-6342 bp Feature: gene Location: 6732-6893 bp Feature: gene Location: 7273-7470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ribbon_3 (pfam13248), PinE (COG1961), RVT-UG2

Seq: AOQU01000366.1 Escherichia coli TOP2522-1 391, whole genome shotgun sequence (4561 bp)
Overview 1 RT 1: 1127-4506 bp Neighborhood of RT #1 [1127, 4526] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1127-1402 bp Feature: domain Description: InsE Location: 1139-1388 bp Feature: domain Description: InsE Location: 113 9-13 88 bp Feature: gene Location: 1399-1872 bp Feature: domain Description: PHA02517 Location: 1489-1807 bp Feature: domain Description: PHA02517 Location: 1489-1807 bp Feature: gene Location: 2464-3987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737-3469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 7-3 469 bp Feature: domain Description: GIIM Note: maturase Location: 3544-3742 bp Feature: domain Description: GIIM Note: maturase Location: 3 544-3 742 bp Feature: gene Location: 4197-4526 bp Feature: domain Description: PHA02517 Location: 4200-4506 bp Feature: domain Description: PHA02517 Location: 4200-4506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)