myRT

myRT report for GCA_000398785.1_Baci_cere_TIAC219_V2

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Seq: KB976041.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.6, whole genome shotgun sequence (443148 bp)
Overview 1 RT 1: 226163-231639 bp Neighborhood of RT #1 [226163, 232361] xerD Phage_int_SAM_4 RVT-Retrons Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 226163-226360 bp Ori: EOQ59749.1 Feature: domain Description: xerD Location: 226202-226352 bp Feature: domain Description: xerD Location: 226202-226352 bp Feature: gene Location: 226360-226752 bp Ori: EOQ59750.1 Feature: domain Description: Phage_int_SAM_4 Location: 226504-226702 bp Feature: domain Description: Phage_int_SAM_4 Location: 226504-226702 bp Feature: gene Location: 227285-228385 bp Ori: EOQ59751.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227513-228134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22751 3-2281 34 bp Feature: gene Location: 228563-229822 bp Feature: gene Location: 229890-232361 bp Ori: EOQ59753.1 Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 230733-231639 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 230733-231 639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT xerD (PRK02436), Phage_int_SAM_4 (pfam13495), RVT-Retrons, Peptidases_S8_Subtilisin_like_2 (cd04847)

Seq: KB976022.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.22, whole genome shotgun sequence (21164 bp)
Overview 1 RT 1: 12894-19851 bp Neighborhood of RT #1 [12894, 20228] RVT-GII Intron_maturas2 HNHc TraG-D_C Ftsk_gamma Ftsk_gamma HTH_XRE Feature: gene Location: 12894-13280 bp Feature: gene Location: 13298-14809 bp Feature: gene Location: 15401-17218 bp Ori: EOQ55902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15671-16496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15671-16496 bp Feature: domain Description: Intron_maturas2 Location: 16574-16868 bp Feature: domain Description: Intron_maturas2 Location: 16574-16868 bp Feature: domain Description: HNHc Note: nucleases Location: 17015-17189 bp Feature: domain Description: HNHc Note: nucleases Location: 17015-17189 bp Feature: gene Location: 17346-19346 bp Ori: EOQ55903.1 Feature: domain Description: TraG-D_C Location: 17463-17823 bp Feature: domain Description: TraG-D_C Location: 17463-1782 3 bp Feature: domain Description: Ftsk_gamma Location: 18228-18408 bp Feature: domain Description: Ftsk_gamma Location: 182 2 8-18408 bp Feature: domain Description: Ftsk_gamma Location: 18540-18678 bp Feature: domain Description: Ftsk_gamma Location: 18540-18678 bp Feature: gene Location: 19668-20228 bp Ori: EOQ55904.1 Feature: domain Description: HTH_XRE Location: 19680-19851 bp Feature: domain Description: HTH_XRE Location: 19680-19851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), HTH_XRE (smart00530)

Seq: KB976018.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.19, whole genome shotgun sequence (75132 bp)
Overview 1 RT 1: 66554-74613 bp Neighborhood of RT #1 [66554, 74849] spore_ger_x_C COG3547 Transposase_20 RVT-GII GIIM DDE_Tnp_1 DEDD_Tnp_IS110 Feature: gene Location: 66554-67747 bp Ori: EOQ56874.1 Feature: domain Description: spore_ger_x_C Location: 66557-67715 bp Feature: domain Description: spore_ger_x_C Location: 66557-67715 bp Feature: gene Location: 68655-69866 bp Ori: EOQ56875.1 Feature: domain Description: COG3547 Location: 68727-69162 bp Feature: domain Description: COG3 547 Location: 68727-69162 bp Feature: domain Description: Transposase_20 Location: 69471-69702 bp Feature: domain Description: Transposase_20 Location: 69471-69702 bp Feature: gene Location: 70613-71788 bp Ori: EOQ56876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70898-71537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70898-7153 7 bp Feature: domain Description: GIIM Note: maturase Location: 71612-71780 bp Feature: domain Description: GIIM Note: maturase Location: 71612-71780 bp Feature: gene Location: 72293-73351 bp Ori: EOQ56877.1 Feature: domain Description: DDE_Tnp_1 Location: 72650-73337 bp Feature: domain Description: DDE_Tnp_1 Location: 72650-73 3 3 7 bp Feature: gene Location: 74118-74849 bp Ori: EOQ56878.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 74133-74613 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 7413 3 -74613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_ger_x_C (TIGR02887), COG3547 (Transposase ), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DEDD_Tnp_IS110 (pfam01548)

Seq: KB976009.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.10, whole genome shotgun sequence (157461 bp)
Overview 1 RT 1: 122145-128394 bp Neighborhood of RT #1 [122145, 131636] CwlT_like NlpD Spr RVT-GII HNHc CwlT_like TrbL Feature: gene Location: 122145-122720 bp Feature: gene Location: 122737-123831 bp Ori: EOQ58702.1 Feature: domain Description: CwlT_like Location: 122764-122950 bp Feature: domain Description: CwlT_like Location: 122764 -122950 bp Feature: domain Description: NlpD Location: 122977-123400 bp Feature: domain Description: NlpD Location: 122977-1234 00 bp Feature: domain Description: Spr Location: 123436-123772 bp Feature: domain Description: Spr Location: 1234 36-123772 bp Feature: gene Location: 123900-125696 bp Ori: EOQ58703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124158-124863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 158-124 863 bp Feature: domain Description: HNHc Note: nucleases Location: 125424-125559 bp Feature: domain Description: HNHc Note: nucleases Location: 1254 24 -125559 bp Feature: gene Location: 126469-127620 bp Ori: EOQ58704.1 Feature: domain Description: CwlT_like Location: 127318-127603 bp Feature: domain Description: CwlT_like Location: 127318-127603 bp Feature: gene Location: 127617-131636 bp Ori: EOQ58705.1 Feature: domain Description: TrbL Location: 127896-128394 bp Feature: domain Description: TrbL Location: 127896-128394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507), TrbL (pfam04610)

Seq: KB976008.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.1, whole genome shotgun sequence (1658261 bp)
Overview 1 RT 1: 1615380-1621001 bp Neighborhood of RT #1 [1615380, 1621001] CwlA SH3b SH3b COG4824 RVT-GII GIIM Feature: gene Location: 1615380-1616312 bp Ori: EOQ70487.1 Feature: domain Description: CwlA Location: 1615389-1615878 bp Feature: domain Description: CwlA Location: 1615 389-1615 878 bp Feature: domain Description: SH3b Location: 1615917-1616034 bp Feature: domain Description: SH3b Location: 1615 917-1616034 bp Feature: domain Description: SH3b Location: 1616142-1616301 bp Feature: domain Description: SH3b Location: 1616142-1616301 bp Feature: gene Location: 1616312-1616737 bp Ori: EOQ70488.1 Feature: domain Description: COG4824 Location: 1616327-1616717 bp Feature: domain Description: COG4824 Location: 1616327-1616717 bp Feature: gene Location: 1616842-1618116 bp Ori: EOQ70489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617043-1617658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617043-161765 8 bp Feature: domain Description: GIIM Note: maturase Location: 1617718-1617925 bp Feature: domain Description: GIIM Note: maturase Location: 1617718-1617925 bp Feature: gene Location: 1618632-1619003 bp Feature: gene Location: 1619020-1621001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlA (COG5632), SH3b (smart00287), COG4824 (Phage-related holin (Lysis protein) ), RVT-GII, GIIM (pfam08388)

Seq: KB976013.1 Bacillus cereus TIAC219 genomic scaffold actab-supercont2.14, whole genome shotgun sequence (74226 bp)
Overview 1 RT 1: 36048-42491 bp Neighborhood of RT #1 [36048, 42739] TadB RVT-GII Intron_maturas2 HNHc CpaF AAA_31 Feature: gene Location: 36048-36941 bp Feature: gene Location: 36955-37905 bp Ori: EOQ58045.1 Feature: domain Description: TadB Location: 36985-37837 bp Feature: domain Description: TadB Location: 36 985-37837 bp Feature: gene Location: 38304-40121 bp Ori: EOQ58046.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38574-39399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38574-39399 bp Feature: domain Description: Intron_maturas2 Location: 39477-39771 bp Feature: domain Description: Intron_maturas2 Location: 39477-39771 bp Feature: domain Description: HNHc Note: nucleases Location: 39918-40092 bp Feature: domain Description: HNHc Note: nucleases Location: 39918-40092 bp Feature: gene Location: 40713-41915 bp Ori: EOQ58047.1 Feature: domain Description: CpaF Location: 40944-41886 bp Feature: domain Description: CpaF Location: 40944-41886 bp Feature: gene Location: 41903-42739 bp Ori: EOQ58048.1 Feature: domain Description: AAA_31 Location: 41939-42491 bp Feature: domain Description: AAA_31 Location: 41939-42491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TadB (COG4965), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CpaF (COG4962), AAA_31 (pfam13614)