myRT

myRT report for GCA_000398925.1_Buty_pull_1_20_V1

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Seq: KB976103.1 Butyricicoccus pullicaecorum 1.2 genomic scaffold acBRa-supercont1.1, whole genome shotgun sequence (1868409 bp)
Overview 1 RT 1: 240418-244422 bp 2 RT 2: 727557-733353 bp 3 RT 3: 1052221-1058041 bp Neighborhood of RT #1 [240418, 244422] Phage_XkdX RVT-DGRs Neighborhood of RT #2 [727557, 733367] Amidoligase_2 DUF960 RVT-GII Intron_maturas2 HNHc hyd_TM1266 rSAM_HydE Neighborhood of RT #3 [1052221, 1058052] PrgI RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 240418-240612 bp Feature: domain Description: Phage_XkdX Location: 240505-240577 bp Feature: domain Description: Phage_XkdX Location: 240505-240577 bp Feature: gene Location: 240593-240979 bp Feature: gene Location: 240976-242172 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241198-241759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241 1 98-241 759 bp Feature: gene Location: 242169-242465 bp Feature: gene Location: 242566-244422 bp Feature: gene Location: 727557-728669 bp Feature: domain Description: Amidoligase_2 Location: 728046-728517 bp Feature: domain Description: Amidoligase_2 Location: 728046-72851 7 bp Feature: gene Location: 728684-728965 bp Feature: domain Description: DUF960 Location: 728696-728960 bp Feature: domain Description: DUF960 Location: 728696-728960 bp Feature: gene Location: 729358-731190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729622-730453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729622-730453 bp Feature: domain Description: Intron_maturas2 Location: 730525-730840 bp Feature: domain Description: Intron_maturas2 Location: 730525-730840 bp Feature: domain Description: HNHc Note: nucleases Location: 730987-731161 bp Feature: domain Description: HNHc Note: nucleases Location: 730987-731 1 61 bp Feature: gene Location: 732071-732325 bp Feature: domain Description: hyd_TM1266 Location: 732083-732308 bp Feature: domain Description: hyd_TM1 266 Location: 732083-732308 bp Feature: gene Location: 732318-733367 bp Feature: domain Description: rSAM_HydE Location: 732345-733353 bp Feature: domain Description: rSAM_HydE Location: 732345-733353 bp Feature: gene Location: 1052221-1052688 bp Feature: domain Description: PrgI Location: 1052236-1052509 bp Feature: domain Description: PrgI Location: 1 052236-1 052509 bp Feature: gene Location: 1052709-1053011 bp Feature: gene Location: 1053087-1054919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053351-1054182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 053351 -1 0541 82 bp Feature: domain Description: Intron_maturas2 Location: 1054254-1054569 bp Feature: domain Description: Intron_maturas2 Location: 1 054254-1 054569 bp Feature: domain Description: HNHc Note: nucleases Location: 1054716-1054890 bp Feature: domain Description: HNHc Note: nucleases Location: 1 05471 6-1 054890 bp Feature: gene Location: 1055495-1056166 bp Feature: gene Location: 1056436-1058052 bp Feature: domain Description: SR_TndX_transposase Location: 1056469-1056889 bp Feature: domain Description: SR_TndX_transposase Location: 1 056469-1 056889 bp Feature: domain Description: Recombinase Location: 1056985-1057354 bp Feature: domain Description: Recombinase Location: 1 056985-1 057354 bp Feature: domain Description: Zn_ribbon_recom Location: 1057387-1057564 bp Feature: domain Description: Zn_ribbon_recom Location: 1 057387-1 057564 bp Feature: domain Description: DUF4368 Location: 1057840-1058041 bp Feature: domain Description: DUF4368 Location: 1 057840-1 058041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Amidoligase_2 (pfam12224), DUF960 (pfam06124), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), hyd_TM1266 (TIGR03959), rSAM_HydE (TIGR03956), PrgI (pfam12666)
SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: KB976104.1 Butyricicoccus pullicaecorum 1.2 genomic scaffold acBRa-supercont1.2, whole genome shotgun sequence (816615 bp)
Overview 1 RT 1: 51825-55848 bp Neighborhood of RT #1 [51825, 55848] Avd_like RVT-DGRs FN3 Feature: gene Location: 51825-52079 bp Feature: gene Location: 52093-52491 bp Feature: domain Description: Avd_like Location: 52105-52444 bp Feature: domain Description: Avd_like Location: 52 105-52 444 bp Feature: gene Location: 52751-54073 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53000-53702 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53000-53702 bp Feature: gene Location: 54070-55650 bp Feature: domain Description: FN3 Location: 54772-55036 bp Feature: domain Description: FN3 Location: 54772 -55036 bp Feature: gene Location: 55684-55848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, FN3 (smart00060)