myRT

myRT report for GCA_000399205.1_Baci_cere_IS845_00_V1

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Seq: KB976317.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.2, whole genome shotgun sequence (1737477 bp)
Overview 1 RT 1: 334306-344161 bp 2 RT 2: 590330-597073 bp Neighborhood of RT #1 [334306, 344391] RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #2 [590330, 597075] IscR IDEAL RVT_N RVT-GII GIIM stp PRK02487 Feature: gene Location: 334306-334497 bp Feature: gene Location: 334510-334923 bp Feature: gene Location: 335930-337858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336251-336986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336251 -336986 bp Feature: domain Description: HNHc Note: nucleases Location: 337577-337742 bp Feature: domain Description: HNHc Note: nucleases Location: 337577-337742 bp Feature: gene Location: 338027-343600 bp Feature: domain Description: B_ant_repeat Location: 338030-338162 bp Feature: domain Description: B_ant_repeat Location: 338030-3381 62 bp Feature: domain Description: B_ant_repeat Location: 338402-338555 bp Feature: domain Description: B_ant_repeat Location: 338402-338555 bp Feature: domain Description: B_ant_repeat Location: 338798-338954 bp Feature: domain Description: B_ant_repeat Location: 338798-338954 bp Feature: domain Description: B_ant_repeat Location: 339194-339350 bp Feature: domain Description: B_ant_repeat Location: 3391 94-339350 bp Feature: domain Description: B_ant_repeat Location: 339590-339746 bp Feature: domain Description: B_ant_repeat Location: 339590-339746 bp Feature: domain Description: B_ant_repeat Location: 339986-340139 bp Feature: domain Description: B_ant_repeat Location: 339986-3401 39 bp Feature: domain Description: B_ant_repeat Location: 340382-340538 bp Feature: domain Description: B_ant_repeat Location: 340382-340538 bp Feature: domain Description: B_ant_repeat Location: 340778-340934 bp Feature: domain Description: B_ant_repeat Location: 340778-340934 bp Feature: domain Description: B_ant_repeat Location: 341174-341330 bp Feature: domain Description: B_ant_repeat Location: 341 1 74-341 330 bp Feature: domain Description: B_ant_repeat Location: 341570-341723 bp Feature: domain Description: B_ant_repeat Location: 341 570-341 723 bp Feature: domain Description: B_ant_repeat Location: 341966-342122 bp Feature: domain Description: B_ant_repeat Location: 341 966-3421 22 bp Feature: domain Description: B_ant_repeat Location: 342362-342518 bp Feature: domain Description: B_ant_repeat Location: 342362-34251 8 bp Feature: domain Description: B_ant_repeat Location: 342758-342914 bp Feature: domain Description: B_ant_repeat Location: 342758-34291 4 bp Feature: domain Description: B_ant_repeat Location: 343154-343307 bp Feature: domain Description: B_ant_repeat Location: 3431 54-343307 bp Feature: gene Location: 344014-344391 bp Feature: domain Description: B_ant_repeat Location: 344023-344161 bp Feature: domain Description: B_ant_repeat Location: 344023-3441 61 bp Feature: gene Location: 590330-590743 bp Feature: domain Description: IscR Location: 590333-590726 bp Feature: domain Description: IscR Location: 590333-590726 bp Feature: gene Location: 590860-591195 bp Feature: domain Description: IDEAL Location: 591064-591160 bp Feature: domain Description: IDEAL Location: 591 064-591 1 60 bp Feature: gene Location: 591986-593632 bp Feature: RT Description: RVT_N Location: 592028-592265 bp Feature: RT Description: RVT_N Location: 592028-592265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592319-592979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59231 9-592979 bp Feature: domain Description: GIIM Note: maturase Location: 593048-593279 bp Feature: domain Description: GIIM Note: maturase Location: 593048-593279 bp Feature: gene Location: 594706-596025 bp Feature: domain Description: stp Location: 594793-595993 bp Feature: domain Description: stp Location: 594793-595993 bp Feature: gene Location: 596599-597075 bp Feature: domain Description: PRK02487 Location: 596614-597073 bp Feature: domain Description: PRK02487 Location: 59661 4-597073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), B_ant_repeat (TIGR01451), IscR (TIGR02010), IDEAL (smart00914), RVT_N (pfam13655), GIIM (pfam08388), stp (TIGR00814), PRK02487 (heme-degrading domain-containing protein)

Seq: KB976318.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.3, whole genome shotgun sequence (1060270 bp)
Overview 1 RT 1: 727857-733817 bp Neighborhood of RT #1 [727857, 733822] PP2C_2 asn_synth_AEB RVT-GII HNHc AsnB PRK06811 Feature: gene Location: 727857-728684 bp Feature: domain Description: PP2C_2 Location: 728229-728568 bp Feature: domain Description: PP2 C_2 Location: 72 82 2 9-72 8568 bp Feature: gene Location: 728727-730409 bp Feature: domain Description: asn_synth_AEB Location: 728757-730185 bp Feature: domain Description: asn_synth_AEB Location: 72 8757-730185 bp Feature: gene Location: 730490-732166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730634-731339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730634-731339 bp Feature: domain Description: HNHc Note: nucleases Location: 731918-732050 bp Feature: domain Description: HNHc Note: nucleases Location: 731918-732 050 bp Feature: gene Location: 732800-732997 bp Feature: domain Description: AsnB Location: 732809-732986 bp Feature: domain Description: AsnB Location: 732 809-732 986 bp Feature: gene Location: 733256-733822 bp Feature: domain Description: PRK06811 Location: 733259-733817 bp Feature: domain Description: PRK06811 Location: 7332 59-733817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PP2C_2 (pfam13672), asn_synth_AEB (TIGR01536), RVT-GII, HNHc (smart00507), AsnB (COG0367), PRK06811 (RNA polymerase factor sigma-70; Validated)

Seq: KB976324.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.9, whole genome shotgun sequence (19783 bp)
Overview 1 RT 1: 613-6373 bp Neighborhood of RT #1 [613, 6373] RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Feature: gene Location: 613-2259 bp Feature: RT Description: RVT_N Location: 655-892 bp Feature: RT Description: RVT_N Location: 655-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1606 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1906 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1906 bp Feature: gene Location: 2472-5972 bp Feature: domain Description: TraG-D_C Location: 4089-4449 bp Feature: domain Description: TraG-D_C Location: 4089-4449 bp Feature: domain Description: Ftsk_gamma Location: 4857-5034 bp Feature: domain Description: Ftsk_gamma Location: 4857-503 4 bp Feature: domain Description: Ftsk_gamma Location: 5166-5301 bp Feature: domain Description: Ftsk_gamma Location: 5166-53 01 bp Feature: gene Location: 5990-6373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KB976319.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.4, whole genome shotgun sequence (315596 bp)
Overview 1 RT 1: 229288-240903 bp 2 RT 2: 302650-307882 bp 3 RT 3: 311478-315595 bp Neighborhood of RT #1 [229288, 240903] HepA RVT-GII HNHc DEXDc MTS RVT-GII HNHc Neighborhood of RT #2 [302650, 307882] beta_clamp RVT-GII COG4712 Neighborhood of RT #3 [311478, 315596] rpsA nuc_hydro RVT_N RVT-GII Feature: gene Location: 229288-230001 bp Feature: gene Location: 230018-231700 bp Feature: domain Description: HepA Location: 230912-231146 bp Feature: domain Description: HepA Location: 230912-23114 6 bp Feature: gene Location: 231761-233560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232064-232766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232064 -232766 bp Feature: domain Description: HNHc Note: nucleases Location: 233291-233441 bp Feature: domain Description: HNHc Note: nucleases Location: 233291-2334 4 1 bp Feature: gene Location: 234261-235940 bp Feature: domain Description: DEXDc Location: 235041-235914 bp Feature: domain Description: DEXDc Location: 23504 1-235914 bp Feature: gene Location: 236012-236239 bp Feature: gene Location: 236255-237376 bp Feature: domain Description: MTS Location: 236351-236714 bp Feature: domain Description: MTS Location: 236351-236714 bp Feature: gene Location: 237521-239449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237842-238577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23784 2-238577 bp Feature: domain Description: HNHc Note: nucleases Location: 239168-239333 bp Feature: domain Description: HNHc Note: nucleases Location: 239168-239333 bp Feature: gene Location: 240331-240468 bp Feature: gene Location: 240490-240903 bp Feature: gene Location: 302650-303762 bp Feature: domain Description: beta_clamp Location: 302653-303757 bp Feature: domain Description: beta_clamp Location: 302653-303757 bp Feature: gene Location: 303843-304370 bp Feature: gene Location: 304448-306349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304766-305468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304 766-3054 68 bp Feature: gene Location: 307108-307464 bp Feature: domain Description: COG4712 Location: 307117-307459 bp Feature: domain Description: COG4 712 Location: 307117-3074 59 bp Feature: gene Location: 307487-307882 bp Feature: gene Location: 311478-312461 bp Feature: domain Description: rpsA Location: 311745-312282 bp Feature: domain Description: rpsA Location: 31174 5-312282 bp Feature: gene Location: 313076-314026 bp Feature: domain Description: nuc_hydro Location: 313091-313997 bp Feature: domain Description: nuc_hydro Location: 313091-313997 bp Feature: gene Location: 314746-315596 bp Feature: RT Description: RVT_N Location: 314788-315025 bp Feature: RT Description: RVT_N Location: 314 788-315025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315079-315595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315079-315595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RVT-GII, HNHc (smart00507), DEXDc (smart00487), MTS (pfam05175), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655)

Seq: KB976321.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.6, whole genome shotgun sequence (77345 bp)
Overview 1 RT 1: 733-6661 bp Neighborhood of RT #1 [733, 6661] RVT-GII HNHc T4SS-DNA_transf T4SS-DNA_transf Feature: gene Location: 733-2565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033-1738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033-1738 bp Feature: domain Description: HNHc Note: nucleases Location: 2317-2449 bp Feature: domain Description: HNHc Note: nucleases Location: 2317-2449 bp Feature: gene Location: 2763-4649 bp Feature: domain Description: T4SS-DNA_transf Location: 2772-3255 bp Feature: domain Description: T4SS-DNA_transf Location: 2772-325 5 bp Feature: domain Description: T4SS-DNA_transf Location: 3645-4161 bp Feature: domain Description: T4SS-DNA_transf Location: 3645 -4161 bp Feature: gene Location: 4684-6661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, HNHc (smart00507)

Seq: KB976320.1 Bacillus cereus IS845/00 genomic scaffold acqVA-supercont1.5, whole genome shotgun sequence (78326 bp)
Overview 1 RT 1: 117-3711 bp 2 RT 2: 73570-77360 bp Neighborhood of RT #1 [117, 4052] RVT_N RVT-GII GIIM ManC HTH_MlrA-like_sg1 Neighborhood of RT #2 [73570, 77713] ParM_like NlpD RVT_N RVT-GII GIIM Feature: gene Location: 117-1763 bp Feature: RT Description: RVT_N Location: 159-396 bp Feature: RT Description: RVT_N Location: 159-396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1110 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1410 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1410 bp Feature: gene Location: 2441-3013 bp Feature: domain Description: ManC Location: 2633-2999 bp Feature: domain Description: ManC Location: 26 33-2999 bp Feature: gene Location: 3492-4052 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 3531-3711 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 3531-3711 bp Feature: gene Location: 73570-74736 bp Feature: domain Description: ParM_like Location: 73636-74695 bp Feature: domain Description: ParM_like Location: 736 36 -746 95 bp Feature: gene Location: 75307-75873 bp Feature: domain Description: NlpD Location: 75511-75862 bp Feature: domain Description: NlpD Location: 75511-7586 2 bp Feature: gene Location: 76067-77713 bp Feature: RT Description: RVT_N Location: 76109-76346 bp Feature: RT Description: RVT_N Location: 76 109-76 346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76400-77060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 400-7706 0 bp Feature: domain Description: GIIM Note: maturase Location: 77129-77360 bp Feature: domain Description: GIIM Note: maturase Location: 77129-7736 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ManC (COG0662), HTH_MlrA-like_sg1 (cd04764), ParM_like (cd10227), NlpD (COG0739)