myRT

myRT report for GCA_000399225.1_Baci_cere_IS195_V1

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Seq: KB976334.1 Bacillus cereus IS195 genomic scaffold acqVz-supercont1.6, whole genome shotgun sequence (75800 bp)
Overview 1 RT 1: 1-3584 bp 2 RT 2: 43637-49762 bp 3 RT 3: 72898-75790 bp Neighborhood of RT #1 [1, 3625] RVT-GII GIIM NlpD ParM_like Neighborhood of RT #2 [43637, 49965] AAA_10 RVT-GII HNHc TraC-F-type AAA_10 TcpE Neighborhood of RT #3 [72898, 75800] HTH_MlrA-like_sg1 ManC RVT_N RVT-GII Feature: gene Location: 1-1128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0-475 bp Feature: domain Description: GIIM Note: maturase Location: 544-775 bp Feature: domain Description: GIIM Note: maturase Location: 544-775 bp Feature: gene Location: 1322-1888 bp Feature: domain Description: NlpD Location: 1526-1877 bp Feature: domain Description: NlpD Location: 1 526-1 877 bp Feature: gene Location: 2459-3625 bp Feature: domain Description: ParM_like Location: 2525-3584 bp Feature: domain Description: ParM_like Location: 2525-3584 bp Feature: gene Location: 43637-44146 bp Feature: gene Location: 44205-45218 bp Feature: domain Description: AAA_10 Location: 44244-45171 bp Feature: domain Description: AAA_1 0 Location: 44244-451 71 bp Feature: gene Location: 45299-47131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45599-46304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45599-46304 bp Feature: domain Description: HNHc Note: nucleases Location: 46883-47015 bp Feature: domain Description: HNHc Note: nucleases Location: 46883-4701 5 bp Feature: gene Location: 47847-49454 bp Feature: domain Description: TraC-F-type Location: 48633-49122 bp Feature: domain Description: TraC-F-type Location: 48633-491 22 bp Feature: domain Description: AAA_10 Location: 49257-49437 bp Feature: domain Description: AAA_1 0 Location: 49257-49437 bp Feature: gene Location: 49414-49965 bp Feature: domain Description: TcpE Location: 49486-49762 bp Feature: domain Description: TcpE Location: 49486-49762 bp Feature: gene Location: 72898-73458 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 72937-73117 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 72937-731 1 7 bp Feature: gene Location: 73937-74509 bp Feature: domain Description: ManC Location: 74129-74495 bp Feature: domain Description: ManC Location: 741 29-74495 bp Feature: gene Location: 75187-75800 bp Feature: RT Description: RVT_N Location: 75229-75466 bp Feature: RT Description: RVT_N Location: 75229-75466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75520-75790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75520-75790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NlpD (COG0739), ParM_like (cd10227), AAA_10 (pfam12846), HNHc (smart00507), TraC-F-type (TIGR02746), TcpE (pfam12648), HTH_MlrA-like_sg1 (cd04764), ManC (COG0662)
RVT_N (pfam13655)

Seq: KB976331.1 Bacillus cereus IS195 genomic scaffold acqVz-supercont1.3, whole genome shotgun sequence (1254091 bp)
Overview 1 RT 1: 326335-332800 bp Neighborhood of RT #1 [326335, 332916] PRK06811 AsnB RVT-GII asn_synth_AEB PP2C_2 Feature: gene Location: 326335-326901 bp Feature: domain Description: PRK06811 Location: 326338-326896 bp Feature: domain Description: PRK06811 Location: 32 6338-32 6896 bp Feature: gene Location: 327160-327357 bp Feature: domain Description: AsnB Location: 327169-327346 bp Feature: domain Description: AsnB Location: 32 7169-32 7346 bp Feature: gene Location: 328073-329522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328373-329078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8373-32 9078 bp Feature: gene Location: 330364-332046 bp Feature: domain Description: asn_synth_AEB Location: 330394-331822 bp Feature: domain Description: asn_synth_AEB Location: 330394-33182 2 bp Feature: gene Location: 332089-332916 bp Feature: domain Description: PP2C_2 Location: 332461-332800 bp Feature: domain Description: PP2 C_2 Location: 332 461-332 800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06811 (RNA polymerase factor sigma-70; Validated), AsnB (COG0367), RVT-GII, asn_synth_AEB (TIGR01536), PP2C_2 (pfam13672)

Seq: KB976330.1 Bacillus cereus IS195 genomic scaffold acqVz-supercont1.2, whole genome shotgun sequence (1790765 bp)
Overview 1 RT 1: 1-2731 bp 2 RT 2: 337485-347340 bp 3 RT 3: 594011-600754 bp 4 RT 4: 666472-672942 bp Neighborhood of RT #1 [1, 2829] RVT-GII HNHc amiF YugN Neighborhood of RT #2 [337485, 347570] RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #3 [594011, 600756] IscR IDEAL RVT_N RVT-GII GIIM stp PRK02487 Neighborhood of RT #4 [666472, 673136] YbaK_EbsC GrpB RVT_N RVT-GII GIIM HTH_3 TPR Hydrolase_4 Feature: gene Location: 1-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-850 bp Feature: domain Description: HNHc Note: nucleases Location: 1429-1561 bp Feature: domain Description: HNHc Note: nucleases Location: 1429-1561 bp Feature: gene Location: 1794-2417 bp Feature: domain Description: amiF Location: 1797-2412 bp Feature: domain Description: amiF Location: 1797-2412 bp Feature: gene Location: 2464-2829 bp Feature: domain Description: YugN Location: 2482-2731 bp Feature: domain Description: YugN Location: 2482-273 1 bp Feature: gene Location: 337485-337676 bp Feature: gene Location: 337689-338102 bp Feature: gene Location: 339109-341037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339430-340165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 943 0-3 40165 bp Feature: domain Description: HNHc Note: nucleases Location: 340756-340921 bp Feature: domain Description: HNHc Note: nucleases Location: 3 40756-3 40921 bp Feature: gene Location: 341206-346779 bp Feature: domain Description: B_ant_repeat Location: 341209-341341 bp Feature: domain Description: B_ant_repeat Location: 3 41209-3 413 41 bp Feature: domain Description: B_ant_repeat Location: 341581-341734 bp Feature: domain Description: B_ant_repeat Location: 3 41581-3 4173 4 bp Feature: domain Description: B_ant_repeat Location: 341977-342133 bp Feature: domain Description: B_ant_repeat Location: 3 41977-3 4213 3 bp Feature: domain Description: B_ant_repeat Location: 342373-342529 bp Feature: domain Description: B_ant_repeat Location: 3 423 73 -3 42529 bp Feature: domain Description: B_ant_repeat Location: 342769-342925 bp Feature: domain Description: B_ant_repeat Location: 3 42769-3 42925 bp Feature: domain Description: B_ant_repeat Location: 343165-343318 bp Feature: domain Description: B_ant_repeat Location: 3 43 165-3 43 3 18 bp Feature: domain Description: B_ant_repeat Location: 343561-343717 bp Feature: domain Description: B_ant_repeat Location: 3 43 561-3 43 717 bp Feature: domain Description: B_ant_repeat Location: 343957-344113 bp Feature: domain Description: B_ant_repeat Location: 3 43 957-3 44113 bp Feature: domain Description: B_ant_repeat Location: 344353-344509 bp Feature: domain Description: B_ant_repeat Location: 3 443 53 -3 44509 bp Feature: domain Description: B_ant_repeat Location: 344749-344902 bp Feature: domain Description: B_ant_repeat Location: 3 44749-3 44902 bp Feature: domain Description: B_ant_repeat Location: 345145-345301 bp Feature: domain Description: B_ant_repeat Location: 3 45145-3 453 01 bp Feature: domain Description: B_ant_repeat Location: 345541-345697 bp Feature: domain Description: B_ant_repeat Location: 3 45541-3 45697 bp Feature: domain Description: B_ant_repeat Location: 345937-346093 bp Feature: domain Description: B_ant_repeat Location: 3 4593 7-3 46093 bp Feature: domain Description: B_ant_repeat Location: 346333-346486 bp Feature: domain Description: B_ant_repeat Location: 3 463 3 3 -3 46486 bp Feature: gene Location: 347193-347570 bp Feature: domain Description: B_ant_repeat Location: 347202-347340 bp Feature: domain Description: B_ant_repeat Location: 3 47202-3 473 40 bp Feature: gene Location: 594011-594424 bp Feature: domain Description: IscR Location: 594014-594407 bp Feature: domain Description: IscR Location: 594014-594407 bp Feature: gene Location: 594541-594876 bp Feature: domain Description: IDEAL Location: 594745-594841 bp Feature: domain Description: IDEAL Location: 594745-594841 bp Feature: gene Location: 595667-597313 bp Feature: RT Description: RVT_N Location: 595709-595946 bp Feature: RT Description: RVT_N Location: 595709-595946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596000-596660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596000-596660 bp Feature: domain Description: GIIM Note: maturase Location: 596729-596960 bp Feature: domain Description: GIIM Note: maturase Location: 596729-596960 bp Feature: gene Location: 598387-599706 bp Feature: domain Description: stp Location: 598474-599674 bp Feature: domain Description: stp Location: 598474-599674 bp Feature: gene Location: 600280-600756 bp Feature: domain Description: PRK02487 Location: 600295-600754 bp Feature: domain Description: PRK02487 Location: 600295-600754 bp Feature: gene Location: 666472-666948 bp Feature: domain Description: YbaK_EbsC Location: 666490-666940 bp Feature: domain Description: YbaK_EbsC Location: 666490-666940 bp Feature: gene Location: 667535-668065 bp Feature: domain Description: GrpB Location: 667547-668021 bp Feature: domain Description: GrpB Location: 667547-668021 bp Feature: gene Location: 668782-670428 bp Feature: RT Description: RVT_N Location: 668824-669061 bp Feature: RT Description: RVT_N Location: 668824-669061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669115-669775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669115-669775 bp Feature: domain Description: GIIM Note: maturase Location: 669844-670075 bp Feature: domain Description: GIIM Note: maturase Location: 669844-670075 bp Feature: gene Location: 670983-672107 bp Feature: domain Description: HTH_3 Location: 671013-671175 bp Feature: domain Description: HTH_3 Location: 671013 -671175 bp Feature: domain Description: TPR Location: 671739-671862 bp Feature: domain Description: TPR Location: 67173 9-671862 bp Feature: gene Location: 672117-673136 bp Feature: domain Description: Hydrolase_4 Location: 672282-672942 bp Feature: domain Description: Hydrolase_4 Location: 672282-672942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), amiF (PRK13287), YugN (pfam08868), B_ant_repeat (TIGR01451), IscR (TIGR02010), IDEAL (smart00914), RVT_N (pfam13655), GIIM (pfam08388), stp (TIGR00814)
PRK02487 (heme-degrading domain-containing protein), YbaK_EbsC (TIGR00011), GrpB (pfam04229), HTH_3 (pfam01381), TPR (smart00028), Hydrolase_4 (pfam12146)

Seq: KB976332.1 Bacillus cereus IS195 genomic scaffold acqVz-supercont1.4, whole genome shotgun sequence (341030 bp)
Overview 1 RT 1: 3529-12557 bp 2 RT 2: 70750-77866 bp 3 RT 3: 253814-265429 bp 4 RT 4: 327176-332408 bp 5 RT 5: 336004-340565 bp Neighborhood of RT #1 [3529, 12557] rpsA nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #2 [70750, 77892] TRX_family RVT_N RVT-GII GIIM HU InsQ Neighborhood of RT #3 [253814, 265429] HepA RVT-GII HNHc DEXDc MTS RVT-GII HNHc Neighborhood of RT #4 [327176, 332408] beta_clamp RVT-GII COG4712 Neighborhood of RT #5 [336004, 340918] rpsA nuc_hydro RVT_N RVT-GII GIIM Feature: gene Location: 3529-4512 bp Feature: domain Description: rpsA Location: 3796-4333 bp Feature: domain Description: rpsA Location: 3796-4 333 bp Feature: gene Location: 5127-6077 bp Feature: domain Description: nuc_hydro Location: 5142-6048 bp Feature: domain Description: nuc_hydro Location: 514 2-604 8 bp Feature: gene Location: 6797-8443 bp Feature: RT Description: RVT_N Location: 6839-7076 bp Feature: RT Description: RVT_N Location: 6839-7076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7130-7790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7130-7790 bp Feature: domain Description: GIIM Note: maturase Location: 7859-8090 bp Feature: domain Description: GIIM Note: maturase Location: 7859-8090 bp Feature: gene Location: 8656-12156 bp Feature: domain Description: TraG-D_C Location: 10273-10633 bp Feature: domain Description: TraG-D_C Location: 10273-10633 bp Feature: domain Description: Ftsk_gamma Location: 11041-11218 bp Feature: domain Description: Ftsk_gamma Location: 1104 1-11218 bp Feature: domain Description: Ftsk_gamma Location: 11350-11485 bp Feature: domain Description: Ftsk_gamma Location: 11350-114 85 bp Feature: gene Location: 12174-12557 bp Feature: gene Location: 70750-71232 bp Feature: domain Description: TRX_family Location: 70930-71185 bp Feature: domain Description: TRX_family Location: 70930-71185 bp Feature: gene Location: 72252-72809 bp Feature: gene Location: 73917-75563 bp Feature: RT Description: RVT_N Location: 73959-74196 bp Feature: RT Description: RVT_N Location: 73959-74 196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74250-74910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 250-74 910 bp Feature: domain Description: GIIM Note: maturase Location: 74979-75210 bp Feature: domain Description: GIIM Note: maturase Location: 74 979-75210 bp Feature: gene Location: 76250-76522 bp Feature: domain Description: HU Location: 76256-76511 bp Feature: domain Description: HU Location: 76256-76511 bp Feature: gene Location: 76771-77892 bp Feature: domain Description: InsQ Location: 76783-77866 bp Feature: domain Description: InsQ Location: 76783-77866 bp Feature: gene Location: 253814-254527 bp Feature: gene Location: 254544-256226 bp Feature: domain Description: HepA Location: 255438-255672 bp Feature: domain Description: HepA Location: 2554 38-255672 bp Feature: gene Location: 256287-258086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256590-257292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256590-257292 bp Feature: domain Description: HNHc Note: nucleases Location: 257817-257967 bp Feature: domain Description: HNHc Note: nucleases Location: 257817-257967 bp Feature: gene Location: 258787-260466 bp Feature: domain Description: DEXDc Location: 259567-260440 bp Feature: domain Description: DEXDc Location: 259567-2604 4 0 bp Feature: gene Location: 260538-260765 bp Feature: gene Location: 260781-261902 bp Feature: domain Description: MTS Location: 260877-261240 bp Feature: domain Description: MTS Location: 260877-26124 0 bp Feature: gene Location: 262047-263975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262368-263103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262368-263103 bp Feature: domain Description: HNHc Note: nucleases Location: 263694-263859 bp Feature: domain Description: HNHc Note: nucleases Location: 263694 -263859 bp Feature: gene Location: 264857-264994 bp Feature: gene Location: 265016-265429 bp Feature: gene Location: 327176-328288 bp Feature: domain Description: beta_clamp Location: 327179-328283 bp Feature: domain Description: beta_clamp Location: 327179-328283 bp Feature: gene Location: 328369-328896 bp Feature: gene Location: 328974-330875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329292-329994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329292-329994 bp Feature: gene Location: 331634-331990 bp Feature: domain Description: COG4712 Location: 331643-331985 bp Feature: domain Description: COG4 712 Location: 33164 3-331985 bp Feature: gene Location: 332013-332408 bp Feature: gene Location: 336004-336987 bp Feature: domain Description: rpsA Location: 336271-336808 bp Feature: domain Description: rpsA Location: 336271-336808 bp Feature: gene Location: 337602-338552 bp Feature: domain Description: nuc_hydro Location: 337617-338523 bp Feature: domain Description: nuc_hydro Location: 337617-338523 bp Feature: gene Location: 339272-340918 bp Feature: RT Description: RVT_N Location: 339314-339551 bp Feature: RT Description: RVT_N Location: 339314 -339551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339605-340265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339605-34 0265 bp Feature: domain Description: GIIM Note: maturase Location: 340334-340565 bp Feature: domain Description: GIIM Note: maturase Location: 34 0334 -34 0565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), TRX_family (cd02947), HU (cd13831), InsQ (COG0675)
HepA (COG0553), HNHc (smart00507), DEXDc (smart00487), MTS (pfam05175), beta_clamp (cl29549), COG4712 (Uncharacterized protein )

Seq: KB976333.1 Bacillus cereus IS195 genomic scaffold acqVz-supercont1.5, whole genome shotgun sequence (77202 bp)
Overview 1 RT 1: 69462-76354 bp Neighborhood of RT #1 [69462, 76470] T4SS-DNA_transf T4SS-DNA_transf RVT-GII HNHc Feature: gene Location: 69462-72229 bp Feature: gene Location: 72264-74150 bp Feature: domain Description: T4SS-DNA_transf Location: 72273-72756 bp Feature: domain Description: T4SS-DNA_transf Location: 72273-7275 6 bp Feature: domain Description: T4SS-DNA_transf Location: 73146-73662 bp Feature: domain Description: T4SS-DNA_transf Location: 73146-73662 bp Feature: gene Location: 74638-76470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74938-75643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74938-75 643 bp Feature: domain Description: HNHc Note: nucleases Location: 76222-76354 bp Feature: domain Description: HNHc Note: nucleases Location: 76222-7635 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, HNHc (smart00507)