myRT

myRT report for GCA_000399365.1_Baci_cere_HuB13-1_V1

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Seq: KB976625.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.33, whole genome shotgun sequence (156153 bp)
Overview 1 RT 1: 112815-118218 bp Neighborhood of RT #1 [112815, 118229] NupC NupC RVT-GII HNHc NupC Feature: gene Location: 112815-113996 bp Ori: EOP17019.1 Feature: domain Description: NupC Location: 112818-113994 bp Feature: domain Description: NupC Location: 1 1 281 8-1 1 3994 bp Feature: gene Location: 114346-114612 bp Ori: EOP17020.1 Feature: domain Description: NupC Location: 114349-114610 bp Feature: domain Description: NupC Location: 1 1 4349-1 1 461 0 bp Feature: gene Location: 114799-116595 bp Ori: EOP17021.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115093-115789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5093-1 1 5789 bp Feature: domain Description: HNHc Note: nucleases Location: 116389-116464 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 6389-1 1 6464 bp Feature: gene Location: 116627-116881 bp Feature: gene Location: 117324-118229 bp Ori: EOP17023.1 Feature: domain Description: NupC Location: 117327-118218 bp Feature: domain Description: NupC Location: 1 1 7327-1 1 821 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NupC (COG1972), RVT-GII, HNHc (smart00507)

Seq: KB976613.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.22, whole genome shotgun sequence (444968 bp)
Overview 1 RT 1: 1-4347 bp 2 RT 2: 13564-19344 bp 3 RT 3: 45611-58316 bp 4 RT 4: 197244-206559 bp 5 RT 5: 379435-384887 bp 6 RT 6: 402913-409340 bp Neighborhood of RT #1 [1, 7589] RVT-GII HNHc CwlT_like TrbL Neighborhood of RT #2 [13564, 19344] DUF3854 LPD1 RVT-GII HNHc Neighborhood of RT #3 [45611, 58495] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma rpsA Neighborhood of RT #4 [197244, 206559] RapH_N TPR TPR AE_Prim_S_like RVT-UG10 Neighborhood of RT #5 [379435, 385051] Rve RVT-GII GIIM DDE_Tnp_1 metallo-hydrolase-like_MBL-fold Neighborhood of RT #6 [402913, 409351] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII Lysozyme_like YxeA Feature: gene Location: 1-72 bp Feature: gene Location: 99-1904 bp Ori: EOP31674.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1089 bp Feature: domain Description: HNHc Note: nucleases Location: 1650-1788 bp Feature: domain Description: HNHc Note: nucleases Location: 1650-1788 bp Feature: gene Location: 2578-3573 bp Ori: EOP31675.1 Feature: domain Description: CwlT_like Location: 3427-3550 bp Feature: domain Description: CwlT_like Location: 342 7-3550 bp Feature: gene Location: 3570-7589 bp Ori: EOP31676.1 Feature: domain Description: TrbL Location: 3849-4347 bp Feature: domain Description: TrbL Location: 3849-4347 bp Feature: gene Location: 13564-14877 bp Ori: EOP31685.1 Feature: domain Description: DUF3854 Location: 14509-14848 bp Feature: domain Description: DUF3854 Location: 14509-14848 bp Feature: gene Location: 14867-15664 bp Ori: EOP31686.1 Feature: domain Description: LPD1 Location: 15413-15608 bp Feature: domain Description: LPD1 Location: 15413-15608 bp Feature: gene Location: 15736-17532 bp Ori: EOP31687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16030-16726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16030-1672 6 bp Feature: domain Description: HNHc Note: nucleases Location: 17326-17401 bp Feature: domain Description: HNHc Note: nucleases Location: 1732 6-17401 bp Feature: gene Location: 17564-17818 bp Feature: gene Location: 18253-19344 bp Feature: gene Location: 45611-45997 bp Feature: gene Location: 46015-47160 bp Feature: gene Location: 47761-49584 bp Ori: EOP31600.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48031-48859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48031-48859 bp Feature: domain Description: Intron_maturas2 Location: 48931-49249 bp Feature: domain Description: Intron_maturas2 Location: 48931-492 49 bp Feature: domain Description: HNHc Note: nucleases Location: 49402-49555 bp Feature: domain Description: HNHc Note: nucleases Location: 49402 -49555 bp Feature: gene Location: 50551-52341 bp Ori: EOP31601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51544 bp Feature: domain Description: HNHc Note: nucleases Location: 52084-52216 bp Feature: domain Description: HNHc Note: nucleases Location: 52 084-52 2 16 bp Feature: gene Location: 52407-52844 bp Feature: gene Location: 53517-55002 bp Ori: EOP31603.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53817-54522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53817-5452 2 bp Feature: domain Description: GIIM Note: maturase Location: 54636-54804 bp Feature: domain Description: GIIM Note: maturase Location: 54636-54804 bp Feature: gene Location: 55553-57253 bp Ori: EOP31532.1 Feature: domain Description: TraG-D_C Location: 55565-55883 bp Feature: domain Description: TraG-D_C Location: 55565-55883 bp Feature: domain Description: Ftsk_gamma Location: 56243-56423 bp Feature: domain Description: Ftsk_gamma Location: 562 43-5642 3 bp Feature: domain Description: Ftsk_gamma Location: 56576-56750 bp Feature: domain Description: Ftsk_gamma Location: 56576-56750 bp Feature: gene Location: 57512-58495 bp Ori: EOP31533.1 Feature: domain Description: rpsA Location: 57779-58316 bp Feature: domain Description: rpsA Location: 57779-58316 bp Feature: gene Location: 197244-197375 bp Feature: gene Location: 197372-198463 bp Ori: EOP31034.1 Feature: domain Description: RapH_N Location: 197393-197564 bp Feature: domain Description: RapH_N Location: 197393-197564 bp Feature: domain Description: TPR Location: 197699-197966 bp Feature: domain Description: TPR Location: 197699-197966 bp Feature: domain Description: TPR Location: 198011-198422 bp Feature: domain Description: TPR Location: 198011-19842 2 bp Feature: gene Location: 199429-205068 bp Ori: EOP31035.1 Feature: domain Description: AE_Prim_S_like Location: 199639-199858 bp Feature: domain Description: AE_Prim_S_like Location: 199639-199858 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 200845-201499 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 2 00845-2 01499 bp Feature: gene Location: 205507-205932 bp Feature: gene Location: 205942-206559 bp Feature: gene Location: 379435-379947 bp Ori: EOP30686.1 Feature: domain Description: Rve Location: 379441-379939 bp Feature: domain Description: Rve Location: 379441-379939 bp Feature: gene Location: 380342-380788 bp Feature: gene Location: 381122-382429 bp Ori: EOP30688.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381407-382046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381407-382 046 bp Feature: domain Description: GIIM Note: maturase Location: 382121-382346 bp Feature: domain Description: GIIM Note: maturase Location: 382 12 1-382 346 bp Feature: gene Location: 382934-383992 bp Ori: EOP30689.1 Feature: domain Description: DDE_Tnp_1 Location: 383294-383978 bp Feature: domain Description: DDE_Tnp_1 Location: 3832 94-383978 bp Feature: gene Location: 384131-385051 bp Ori: EOP30690.1 Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 384185-384887 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 384185-384887 bp Feature: gene Location: 402913-403788 bp Ori: EOP29380.1 Feature: domain Description: NlpD Location: 402928-403360 bp Feature: domain Description: NlpD Location: 402 92 8-403360 bp Feature: domain Description: Spr Location: 403393-403729 bp Feature: domain Description: Spr Location: 403393-40372 9 bp Feature: gene Location: 403812-403946 bp Feature: gene Location: 403948-405771 bp Ori: EOP29382.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404212-405046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4042 12 -405046 bp Feature: domain Description: Intron_maturas2 Location: 405115-405454 bp Feature: domain Description: Intron_maturas2 Location: 405115-405454 bp Feature: domain Description: HNHc Note: nucleases Location: 405592-405748 bp Feature: domain Description: HNHc Note: nucleases Location: 405592 -405748 bp Feature: gene Location: 406347-406538 bp Ori: EOP29383.1 Feature: domain Description: CwlT_like Location: 406374-406530 bp Feature: domain Description: CwlT_like Location: 406374-406530 bp Feature: gene Location: 406561-406656 bp Feature: gene Location: 406757-407410 bp Ori: EOP29366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407021-407411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40702 1-407411 bp Feature: gene Location: 407986-408567 bp Ori: EOP29367.1 Feature: domain Description: Lysozyme_like Location: 408121-408556 bp Feature: domain Description: Lysozyme_like Location: 40812 1-408556 bp Feature: gene Location: 408983-409351 bp Ori: EOP29368.1 Feature: domain Description: YxeA Location: 409034-409340 bp Feature: domain Description: YxeA Location: 409034-409340 bp Sorry, your 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Associated domains:myRT RVT-GII, HNHc (smart00507), CwlT_like, TrbL (pfam04610), DUF3854 (pfam12965), LPD1 (pfam18796), Intron_maturas2 (pfam01348), GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843)
rpsA (TIGR00717), RapH_N (pfam18801), TPR (smart00028), AE_Prim_S_like (cl01287), RVT-UG10, Rve (COG3316), DDE_Tnp_1 (pfam01609), metallo-hydrolase-like_MBL-fold (cl23716), NlpD (COG0739), Spr (COG0791)
Lysozyme_like (pfam13702), YxeA (COG5294)

Seq: KB976624.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.32, whole genome shotgun sequence (1357722 bp)
Overview 1 RT 1: 173962-180370 bp 2 RT 2: 373471-381527 bp Neighborhood of RT #1 [173962, 180375] GltS_FMN OYE_like_FMN RVT-GII HNHc FadH CdnL Neighborhood of RT #2 [373471, 381535] PRK10416 SMC_prok_B RVT-GII HNHc SMC_prok_B rnc Feature: gene Location: 173962-175536 bp Ori: EOP20355.1 Feature: domain Description: GltS_FMN Location: 174109-175471 bp Feature: domain Description: GltS_FMN Location: 174109-175471 bp Feature: gene Location: 175604-176563 bp Ori: EOP20356.1 Feature: domain Description: OYE_like_FMN Location: 175655-176534 bp Feature: domain Description: OYE_like_FMN Location: 175655-17653 4 bp Feature: gene Location: 176615-178420 bp Ori: EOP20357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176909-177605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176909-177605 bp Feature: domain Description: HNHc Note: nucleases Location: 178166-178304 bp Feature: domain Description: HNHc Note: nucleases Location: 178166-1783 04 bp Feature: gene Location: 179083-179337 bp Ori: EOP20358.1 Feature: domain Description: FadH Location: 179170-179302 bp Feature: domain Description: FadH Location: 179170-1793 02 bp Feature: gene Location: 179899-180375 bp Ori: EOP20359.1 Feature: domain Description: CdnL Location: 179917-180370 bp Feature: domain Description: CdnL Location: 179917-1803 70 bp Feature: gene Location: 373471-374460 bp Ori: EOP19705.1 Feature: domain Description: PRK10416 Location: 373495-374437 bp Feature: domain Description: PRK10416 Location: 3 73 495-3 7443 7 bp Feature: gene Location: 374476-377337 bp Ori: EOP19706.1 Feature: domain Description: SMC_prok_B Location: 374482-377305 bp Feature: domain Description: SMC_prok_B Location: 3 74482-3 773 05 bp Feature: gene Location: 377681-379486 bp Ori: EOP19707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377975-378671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 77975-3 78671 bp Feature: domain Description: HNHc Note: nucleases Location: 379232-379370 bp Feature: domain Description: HNHc Note: nucleases Location: 3 7923 2-3 793 70 bp Feature: gene Location: 380160-380651 bp Ori: EOP19708.1 Feature: domain Description: SMC_prok_B Location: 380166-380634 bp Feature: domain Description: SMC_prok_B Location: 3 80166-3 8063 4 bp Feature: gene Location: 380798-381535 bp Ori: EOP19709.1 Feature: domain Description: rnc Location: 380849-381527 bp Feature: domain Description: rnc Location: 3 80849-3 81527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GltS_FMN (cd02808), OYE_like_FMN (cd02933), RVT-GII, HNHc (smart00507), FadH (COG1902), CdnL (COG1329), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), SMC_prok_B (TIGR02168), rnc (PRK00102)

Seq: KB976603.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.13, whole genome shotgun sequence (430317 bp)
Overview 1 RT 1: 218186-223906 bp Neighborhood of RT #1 [218186, 224013] DDE_Tnp_1 RVT-GII GIIM DAP2 Feature: gene Location: 218186-218647 bp Feature: gene Location: 219141-219497 bp Ori: EOP42438.1 Feature: domain Description: DDE_Tnp_1 Location: 219297-219483 bp Feature: domain Description: DDE_Tnp_1 Location: 219297-2194 83 bp Feature: gene Location: 220002-221309 bp Ori: EOP42439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220287-220926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220287-220926 bp Feature: domain Description: GIIM Note: maturase Location: 221001-221226 bp Feature: domain Description: GIIM Note: maturase Location: 221001-221226 bp Feature: gene Location: 222149-222535 bp Feature: gene Location: 222631-224013 bp Ori: EOP42441.1 Feature: domain Description: DAP2 Location: 223162-223906 bp Feature: domain Description: DAP2 Location: 223162-223906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), DAP2 (COG1506)

Seq: KB976604.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.14, whole genome shotgun sequence (32962 bp)
Overview 1 RT 1: 22557-32780 bp Neighborhood of RT #1 [22557, 32917] CwlT_like RVT-GII HNHc RVT-GII HNHc Feature: gene Location: 22557-26591 bp Feature: gene Location: 26588-27586 bp Ori: EOP39451.1 Feature: domain Description: CwlT_like Location: 27440-27560 bp Feature: domain Description: CwlT_like Location: 27440-275 60 bp Feature: gene Location: 28260-30065 bp Ori: EOP39452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28554-29250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285 5 4-2925 0 bp Feature: domain Description: HNHc Note: nucleases Location: 29811-29949 bp Feature: domain Description: HNHc Note: nucleases Location: 29811-29949 bp Feature: gene Location: 31121-32917 bp Ori: EOP39453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31379-32084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31379-32084 bp Feature: domain Description: HNHc Note: nucleases Location: 32645-32780 bp Feature: domain Description: HNHc Note: nucleases Location: 32645 -32780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, RVT-GII, HNHc (smart00507)

Seq: KB976606.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.16, whole genome shotgun sequence (66892 bp)
Overview 1 RT 1: 9793-16100 bp Neighborhood of RT #1 [9793, 16100] VirB4_CagE Lysozyme_like RVT-GII HNHc Lysozyme_like Spr Feature: gene Location: 9793-11727 bp Ori: EOP38145.1 Feature: domain Description: VirB4_CagE Location: 10123-11638 bp Feature: domain Description: VirB4_CagE Location: 10123-116 38 bp Feature: gene Location: 11729-12115 bp Ori: EOP38146.1 Feature: domain Description: Lysozyme_like Location: 11948-12095 bp Feature: domain Description: Lysozyme_like Location: 11948-12095 bp Feature: gene Location: 12789-14594 bp Ori: EOP38147.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13083-13779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13083-13779 bp Feature: domain Description: HNHc Note: nucleases Location: 14340-14478 bp Feature: domain Description: HNHc Note: nucleases Location: 14340-14478 bp Feature: gene Location: 14710-15468 bp Ori: EOP38148.1 Feature: domain Description: Lysozyme_like Location: 14713-15049 bp Feature: domain Description: Lysozyme_like Location: 14713-15049 bp Feature: domain Description: Spr Location: 15064-15451 bp Feature: domain Description: Spr Location: 1506 4-15451 bp Feature: gene Location: 15492-16100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), Lysozyme_like (pfam13702), RVT-GII, HNHc (smart00507), Spr (COG0791)

Seq: KB976612.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.21, whole genome shotgun sequence (137590 bp)
Overview 1 RT 1: 82771-90000 bp Neighborhood of RT #1 [82771, 90000] KOG1000 KOG1000 RVT-GII GIIM Feature: gene Location: 82771-83484 bp Feature: gene Location: 83501-85906 bp Ori: EOP32126.1 Feature: domain Description: KOG1000 Location: 84212-84428 bp Feature: domain Description: KOG1000 Location: 84212-84428 bp Feature: domain Description: KOG1000 Location: 85031-85364 bp Feature: domain Description: KOG1000 Location: 85031-85364 bp Feature: gene Location: 86181-88046 bp Ori: EOP32127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86481-87186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86481-87 186 bp Feature: domain Description: GIIM Note: maturase Location: 87273-87456 bp Feature: domain Description: GIIM Note: maturase Location: 87 27 3-87 456 bp Feature: gene Location: 88793-89701 bp Feature: gene Location: 89773-90000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, GIIM (pfam08388)

Seq: KB976616.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.25, whole genome shotgun sequence (425121 bp)
Overview 1 RT 1: 343049-349258 bp Neighborhood of RT #1 [343049, 349422] OmpR RVT-GII HNHc HATPase_BceS-YxdK-YvcQ-like Uup Uup Feature: gene Location: 343049-343756 bp Ori: EOP26399.1 Feature: domain Description: OmpR Location: 343058-343727 bp Feature: domain Description: OmpR Location: 343058 -343727 bp Feature: gene Location: 343753-344004 bp Feature: gene Location: 344678-346483 bp Ori: EOP26401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344972-345668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344972-345668 bp Feature: domain Description: HNHc Note: nucleases Location: 346229-346367 bp Feature: domain Description: HNHc Note: nucleases Location: 346229-346367 bp Feature: gene Location: 346734-347342 bp Ori: EOP26402.1 Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 347007-347331 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 347007-347331 bp Feature: gene Location: 347794-349422 bp Ori: EOP26403.1 Feature: domain Description: Uup Location: 347803-348034 bp Feature: domain Description: Uup Location: 3478 03-348 034 bp Feature: domain Description: Uup Location: 348049-349258 bp Feature: domain Description: Uup Location: 348 049-349258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-GII, HNHc (smart00507), HATPase_BceS-YxdK-YvcQ-like (cd16948), Uup (COG0488)

Seq: KB976623.1 Bacillus cereus HuB13-1 genomic scaffold acrGO-supercont1.31, whole genome shotgun sequence (455616 bp)
Overview 1 RT 1: 453564-455593 bp Neighborhood of RT #1 [453564, 455616] RimL RVT-GII Intron_maturas2 HNHc Feature: gene Location: 453564-454070 bp Ori: EOP21373.1 Feature: domain Description: RimL Location: 453573-454068 bp Feature: domain Description: RimL Location: 453573-454068 bp Feature: gene Location: 454434-454565 bp Feature: gene Location: 454567-455616 bp Ori: EOP21375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454684-454891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454684-45489 1 bp Feature: domain Description: Intron_maturas2 Location: 454960-455299 bp Feature: domain Description: Intron_maturas2 Location: 4549 60-45529 9 bp Feature: domain Description: HNHc Note: nucleases Location: 455437-455593 bp Feature: domain Description: HNHc Note: nucleases Location: 455437-45559 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)